Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0349 ATGAAACTCCCCGTCCCCACCGGTTATCATCCATATTGCAGCAAAGTTCAAACGCTCCCACTCATACCGGCGATAAAGCCCACCTTCCGAAGATCCGGGTGGGCTCGCATGGATTCCACGGTCCGCCGTAATCGCACCAAGCACAAGGTCGTCGTTATCATGGGAGCCACCGGCACCGGAAAATCCAAACTCTCCATCGACCTCGCCACACGCTTCCCCGCCGAGATCATCAACTCTGACAAAATACAAATCTACAGTGGCCTTGACATCACCACTAACAAGATCCAAATGCACGAGCGACAAGGTGTACCCCACCACCTGCTCGGAGATTTCGACTCCTCCCACGCTGAGATAACCCCTTCCCAGTTCCGCTCGGTGGCTGCCGCTGCTATCTCAGACATCTCTTCTCGCCGCAAACTGCCAGTCCTCGCTGGTGGGTCCAATTCCTTTATTCACGCACTCCTCGTCGACCGGTTTGACTCCGAGTCTGACCCCTTCAATGGTTCGGACTCGGTCTCCACCGAATTACGTTACCGCTGTTGTTTCCTATGGGTTGACGTTTCATTTGCTGTTCTCTCCGACTACTTGTCGAAGCGAGTCGATGAAATGCTTGGCTCAGGGATGCTTGAAGAGTTAGCTAAGTTCTACGACCCGGATGAAGACGAGTCTAGACCCAAAACTGGGTTGAGAAAAGCGATAGGAGTCCCCGAGTTCGACAGGCATTTCCGAAAGTACCCTCCCGATGATCCAGAAATGGAAAGTTTTGAAGAGGCAGTGAAGGCCATCAAGGACAACACGTGTCATCTAGCGAAGAAGCAGATAGAGAAGATCCTACGGATGAGGGGAGCTGGGTGGGACCTCAAGAGACTGGACGCCACAGAGGCGTTCAGGGTGCTGCTGTCGTCAGATTCCGGCAAGAAGTCGTCAGAAATATGGGAGAAGCAGGTAGTGGAACCGAGCGTGAAGTTTGTGAGGCGCTTCTTAGAGGAGTAG 993 0.5327 MKLPVPTGYHPYCSKVQTLPLIPAIKPTFRRSGWARMDSTVRRNRTKHKVVVIMGATGTGKSKLSIDLATRFPAEIINSDKIQIYSGLDITTNKIQMHERQGVPHHLLGDFDSSHAEITPSQFRSVAAAAISDISSRRKLPVLAGGSNSFIHALLVDRFDSESDPFNGSDSVSTELRYRCCFLWVDVSFAVLSDYLSKRVDEMLGSGMLEELAKFYDPDEDESRPKTGLRKAIGVPEFDRHFRKYPPDDPEMESFEEAVKAIKDNTCHLAKKQIEKILRMRGAGWDLKRLDATEAFRVLLSSDSGKKSSEIWEKQVVEPSVKFVRRFLEE* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0349 330 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 47 328 IPR039657 -
Vvi1g0349 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 221 IPR027417 -
Vvi1g0349 330 Pfam IPP transferase 83 159 - -
Vvi1g0349 330 Pfam IPP transferase 175 274 - -
Vvi1g0349 330 Gene3D - 47 328 IPR027417 -
Vvi1g0349 330 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 189 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0349 Vvi-Chr1 3309093 3310127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0349 177 329 C2H2 Transcription Factor Family AT2G27760 32.240 8.26e-18 82.0