Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0348 | ATGACTTACGCTCGCCAGTTGTTCGATCAAATTCCCGACCCCAATATTGCACTATGGAACTCGATGTTTCGTGGGTATGCCCAGAGCGAGTCGTACAGAGAAGTGGTATTTTTGTTTTTTCAGATGAAGGGTATGGACATACGGCCCAATTGCTTCACCTTCCCTGTTGTTCTGAAATCATGTGGGAAGATCAATGCATTGATTGAAGGAGAACAAGTGCATTGTTTCTTGATCAAGTGTGGTTTTAGGGGAAACCCGTTTGTGGGCACTACATTGATTGATATGTATTCGGCTGGTGGAACGGTTGGGGATGCTTACAAGATTTTCTGTGAAATGTTTGAGAGGAATGTAGTTGCATGGACTTCGATGATTAATGGGTATATTTTGTCTGCTGATCTGGTTTCCGCACGTCGCCTTTTTGACTTGGCGCCAGAGCGTGATGTTGTGCTGTGGAACATTATGGTTTCAGGGTACATTGAAGGTGGGGACATGGTTGAGGCGCGCAAGCTCTTCCATGAGATGCCAAATCGAGATGTGATGTTTTGGAACACTGTATTGAAGGGTTATGCTACCAATGGGAATGTTGAAGCTCTTGAGGGGCTGTTTGAAGAGATGCCGGAGAGAAACATTTTTTCTTGGAACGCATTGATTGGAGGGTATGCTCATAATGGCCTTTTCTTTGAAGTTTTAGGTTCCTTTAAAAGGATGTTGAGTGAGTCTGATGTGCCTCCTAATGATGCCACTCTTGTGACAGTGTTGTCTGCTTGTGCAAGATTAGGAGCTCTTGATTTGGGCAAGTGGGTACATGTATATGCAGAGAGTAGTGGGTTGAAGGGCAATGTTTATGTTGGGAATGCTTTGATGGATATGTATGCAAAATGTGGGATCATAGAAAATGCAATTTCAGTGTTCCGGGGCATGGACACAAAAGATTTGATCTCCTGGAACACCTTAATTGGAGGCTTAGCGATGCATAGCCGTGGGGCTGATGCCTTAAATTTGTTTTTTCAGATGAAGAATGCTGGACAAAAGCCAGATGGTATCACCTTCATAGGCATCTTGTGTGCTTGTACGCATATGGGTCTAGTTGAAGATGGGTTTGCATATTTTCAATCAATGGCCGATGATTATTTAATCATGCCTCAAATTGAGCATTATGGTTGTATGGTTGATATGCTAGCACGAGCAGGTCGTTTAGAACAGGCTATGGCTTTTGTCAGGAAGATGCCTGTGGAAGCTGATGGTGTCATATGGGCTGGTTTACTTGGGGCCTGTAGGATTTACAAGAATGTTGAGTTGGCCGAACTGGCTCTTCAACGGCTGATTGAACTCGAACCAAAAAACCCTGCAAATTATGTCATGTTGTCCAATATATATGGGGATGCTGGCAGATGGGAAGATGTGGCCCGGCTAAAAGTTGCAATGAGAGATACAGGGTTTAAAAAATTACCAGGGTGTAGTTTGATTGAGGTGAATGATGCTGTAGTTGAGTTCTATTCGTTAGATGAGCGGCATCCCCAGATAGAGGAAATATATGGAGTATTGAGGGGATTAGTGAAGGTTTTAAGATCCTTTGGGTATGTACCCGACCTTACAGGAGCTGGGCGAGGAACTTAA | 1617 | 0.4378 | MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDLTGAGRGT* | 539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0348 | 538 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 269 | 363 | - | - | |
| Vvi1g0348 | 538 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 85 | 119 | IPR002885 | - | |
| Vvi1g0348 | 538 | NCBIfam | pentatricopeptide repeat | 149 | 178 | IPR002885 | - | |
| Vvi1g0348 | 538 | NCBIfam | pentatricopeptide repeat | 313 | 346 | IPR002885 | - | |
| Vvi1g0348 | 538 | NCBIfam | pentatricopeptide repeat | 211 | 245 | IPR002885 | - | |
| Vvi1g0348 | 538 | NCBIfam | pentatricopeptide repeat | 182 | 210 | IPR002885 | - | |
| Vvi1g0348 | 538 | NCBIfam | pentatricopeptide repeat | 18 | 51 | IPR002885 | - | |
| Vvi1g0348 | 538 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 15 | 49 | IPR002885 | - | |
| Vvi1g0348 | 538 | Gene3D | Tetratricopeptide repeat domain | 179 | 275 | IPR011990 | GO:0005515 | |
| Vvi1g0348 | 538 | Gene3D | Tetratricopeptide repeat domain | 1 | 114 | IPR011990 | GO:0005515 | |
| Vvi1g0348 | 538 | Gene3D | Tetratricopeptide repeat domain | 115 | 178 | IPR011990 | GO:0005515 | |
| Vvi1g0348 | 538 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | E motif | 428 | 490 | IPR046848 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat family | 310 | 357 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat family | 14 | 62 | IPR002885 | - | |
| Vvi1g0348 | 538 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 130 | 531 | IPR046960 | GO:0003723|GO:0009451 | |
| Vvi1g0348 | 538 | Pfam | PPR repeat | 211 | 239 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat | 385 | 410 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat | 118 | 145 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat | 182 | 210 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat | 149 | 178 | IPR002885 | - | |
| Vvi1g0348 | 538 | Pfam | PPR repeat | 90 | 117 | IPR002885 | - | |
| Vvi1g0348 | 538 | SUPERFAMILY | TPR-like | 429 | 466 | IPR011990 | GO:0005515 | |
| Vvi1g0348 | 538 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 209 | 243 | IPR002885 | - | |
| Vvi1g0348 | 538 | FunFam | Tetratricopeptide repeat (TPR)-like superfamily protein | 364 | 521 | - | - | |
| Vvi1g0348 | 538 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 147 | 181 | IPR002885 | - | |
| Vvi1g0348 | 538 | FunFam | Uncharacterized protein | 161 | 268 | - | - | |
| Vvi1g0348 | 538 | Gene3D | Tetratricopeptide repeat domain | 288 | 503 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0348 | Vvi-Chr1 | 3281969 | 3283585 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0348 | 4 | 530 | Glycoside Hydrolase | AT3G49170 | 34.444 | 3.57e-107 | 338 |