Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0345 ATGGAGGGGTGGGGGTGCTTGATTTTGTTATGTGTTGTGGTAAAAGATTTAATCTACGATGACATTAATTTAGGCACTTCATTTGATCCTCTATATTGCAGTCTCAAACTGAAGTCTTATAATTTTCCAAGCTTTAGTTATCTTCCATCTGAAGTGTTCGCCTCATATTTTCTGTCTTTCTCTGTCGGTACCATGAGACCGGAGAGGAACCCCCTAGACCTCAACAACTTGCCCGAAGATTTCACTAGAGACGGAAAACAGGTCTTTGAGGATAGCTCCTCCTCCGTTGCTTTAATTGGTTTTGTAGCAGGCTGTAGGAAAAAGAAAAGCGGCGGAAAGGATGGAAAAGATGAGTGTGGGAAGGTCTATGAGTGTAGGTTTTGTTCCCTCAAGTTCTGTAAATCTCAAGCTCTAGGAGGACACATGAACCGCCACCGCCAAGGCAAAGAGACAGAAACACTGAACCGGGCTCGTCAGATTGTCTTCAGTAACGAAAACCTAGCCGCCCAAGGGGTCCCTCATCTAGGCGGCCAACCCATCGCACCAGGGAGCTTTCATCAAACAGGCAACATGGGAGATCCAACACTACCCTTCAGATCAGTCTACCCAACAAGAATGTTTTCGGGTTCTTCATCAACACTCTTAACACCACCACCACAACCATATCTATACGCTTCGCCATCGCGCTTAGTCTCTTATCCATCACAGTATCCTCCACCCTCAATGAATGATTACTATGTAGGCCACGTCCTCAGCAGCGGCTCACAGTACAGTCATCCGGGTCTAAATTACGGAGGTGCTTCAGATTCAAATTACACCTGCATTGGAGCACCAGTGGGACATGGGTTCCCACCCAGCAATGGAGGGGGACGGGGGTCCGAATTGGGTGGATCAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTAGGGACGGGTCACTGCAGAATCAGGAGGAAGGGTTGAATTGGGGAAGGAGCTATGCAGGGTCACAGCAACGTATGGACCCTTCTTTGATCAATCGGTTTCAAGATGGGTTCTAA 1053 0.4853 MEGWGCLILLCVVVKDLIYDDINLGTSFDPLYCSLKLKSYNFPSFSYLPSEVFASYFLSFSVGTMRPERNPLDLNNLPEDFTRDGKQVFEDSSSSVALIGFVAGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQGKETETLNRARQIVFSNENLAAQGVPHLGGQPIAPGSFHQTGNMGDPTLPFRSVYPTRMFSGSSSTLLTPPPQPYLYASPSRLVSYPSQYPPPSMNDYYVGHVLSSGSQYSHPGLNYGGASDSNYTCIGAPVGHGFPPSNGGGRGSELGGSGGGGGGGGGGGGGGGRDGSLQNQEEGLNWGRSYAGSQQRMDPSLINRFQDGF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0345 350 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Vvi1g0345 350 MobiDBLite consensus disorder prediction 285 350 - -
Vvi1g0345 350 FunFam Zinc finger protein STAMENLESS 1 100 171 - -
Vvi1g0345 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Vvi1g0345 350 PANTHER ZINC FINGER PROTEIN JAGGED 96 281 IPR045320 GO:0003700
Vvi1g0345 350 MobiDBLite consensus disorder prediction 319 342 - -
Vvi1g0345 350 Gene3D Classic Zinc Finger 106 173 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0345 68 288 C2H2 Transcription Factor Family AT1G13400 41.304 5.57e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0345 None None None