Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0344 ATGGCAGCTCTACTCTCCGTCTCCTCTGCTCCTTCGTCCAGAACACCTCTCTTTCTGCATCACCCTTCTTCTCCATTCAAGGGAAATGTGAGAAATCTCAAGGCAAACCCATGTCAATTTCTGACTATCAAGCTCGAGGTAAAGGAAAAAGTGAGAAAATCTGGAGTGGTTGTTGCGAGCCAAGGTTCTCCGTCTTCGGTTGTTGATAATGTTCGGTTTCGGCTGGATAATTTGGGGCCACAACCAGGGTCGAGGAAGAAAGCCAAGAGAAAGGGAAGGGGTATATCAGCGGGACAAGGGAACAGTTGTGGGTTTGGGATGAGGGGTCAGAAATCGAGGTCTGGTCCTGGGGTAATGAAGGGCTTCGAGGGCGGCCAGATGCCCCTTTACCGGCGAATCCCCAAATTGCGAGGAATTGCGGGAGGTATGCATGCGGGTTTACCTAAATATGTCCCTGTGAACTTAAAAGACATAGAAGCAGCTGGATTTCAAGAAGGTGAAGAGGTATCACTGGATTCTTTGAAGAAGAAGGGTTTGATCAACCCATCAGGAAGAGAAAGGAGACTCCCTTTGAAGATTCTAGGTGCTGGGGACCTAAGTGTGAAGCTAAATATAAAGGCCCGTGCCTTCTCATCGTCAGCAAAGGAGAAGCTCGAGGCTGCTGGTTGTTCTATCACAGTACTACCAGGCCGGAAGAAGTGGCTAAAGCCATCAGTTATTAAGAATCTTGCACGTGCTGAAGAATATTTTGCCAAGAAAAGAGCTGCAGCAGAACAAGCTTCTTCTTGA 789 0.4804 MAALLSVSSAPSSRTPLFLHHPSSPFKGNVRNLKANPCQFLTIKLEVKEKVRKSGVVVASQGSPSSVVDNVRFRLDNLGPQPGSRKKAKRKGRGISAGQGNSCGFGMRGQKSRSGPGVMKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLDSLKKKGLINPSGRERRLPLKILGAGDLSVKLNIKARAFSSSAKEKLEAAGCSITVLPGRKKWLKPSVIKNLARAEEYFAKKRAAAEQASS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0344 262 MobiDBLite consensus disorder prediction 75 117 - -
Vvi1g0344 262 NCBIfam 50S ribosomal protein L15 75 225 IPR005749 GO:0003735|GO:0006412|GO:0015934
Vvi1g0344 262 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 99 225 IPR021131 -
Vvi1g0344 262 ProSitePatterns Ribosomal protein L15 signature. 192 222 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vvi1g0344 262 Gene3D - 150 227 - -
Vvi1g0344 262 Hamap 50S ribosomal protein L15 [rplO]. 75 228 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vvi1g0344 262 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g0344 262 SUPERFAMILY Ribosomal proteins L15p and L18e 76 227 IPR036227 -
Vvi1g0344 262 PANTHER 50S RIBOSOMAL PROTEIN L15 49 241 IPR005749 GO:0003735|GO:0006412|GO:0015934
Vvi1g0344 262 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0344 Vvi-Chr1 3247071 3249635 Dispersed