Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0338 ATGAGAACAAGCTGCAATGGGTGTAGGGTTCTTCGCAAGGCATGCAGCCAAGACTGCATCATCAAACCTTGCCTTGAGTGGATCAAAAATCCTGATTTCCAAGCCAATGCTACTCTCTTCCTTGCCAAATTCTATGGCCGTGCAGGTCTCATAAACCTCATCAATGCCGGACCCCAACAACTTCGCCCCGCCATATTCAGATCGCTGCTTTGGGAAGCTTGTGGACGGGTAGTGAATCCAATATATGGGTCCGTCGGATTGCTCTGGTCCGGTGACTGGAACCGCTGCCTCGATGCCGTGGATGCAGTGCTCAGAGGTGTTCCCATCGCCAGAAAACCATCTGAAGCTACCTCAAGCAGCCCGAGCGACCATCCTGTAAAGGCCTATGACATACGTCATGTCTCTAAGGATTTCAAATTCCCTACTACTGAAAACCTCAATAGAGTCACAGCCCCAGCCCCAAAACCATTCAAGCGTTCTTCTAAGTCCAAGCCAAAACCTCAAGCCAGCTTGGTTTTCGACTTTGCAACCAAACCAGCCGCAGATCAGTCTGATAAGTTTTGTGACGTTAGATTGCCGTGGCCTAGCTCACACGAGTTCAATCAAACGCCGAGTCACGAACCGTCGTTAGGTTATCACTTAGAATGGCTTACAAAATTAGATACGGAAAGTGATAAGAGCAAAGTAAAGTTGGAACTGACTCTTGGTTCTGGGACCAACTTTTAG 726 0.4848 MRTSCNGCRVLRKACSQDCIIKPCLEWIKNPDFQANATLFLAKFYGRAGLINLINAGPQQLRPAIFRSLLWEACGRVVNPIYGSVGLLWSGDWNRCLDAVDAVLRGVPIARKPSEATSSSPSDHPVKAYDIRHVSKDFKFPTTENLNRVTAPAPKPFKRSSKSKPKPQASLVFDFATKPAADQSDKFCDVRLPWPSSHEFNQTPSHEPSLGYHLEWLTKLDTESDKSKVKLELTLGSGTNF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0338 241 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vvi1g0338 241 Pfam Lateral organ boundaries (LOB) domain 4 97 IPR004883 -
Vvi1g0338 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 4 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0338 Vvi-Chr1 3204649 3205452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0338 1 236 AS2 family AT1G68510 50.607 2.28e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi1g0338 LOB 7e-22 No_clan