Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0337 ATGTACCCAATAATTGTACCATTTTGTTCCAGGTTTGATTTTGGATCAGCTTTTTGTCTGATGATTTCTGAAAAAAATGTGGCGAACGCCGTCGGTGGCAAGACGGCCAGGGCCTGTGATAGCTGCATACGGAAGCGTGCTCGATTTTACTGTGCTGCCGATGATGCCTTCTTGTGCCAGGCGTGCGACATGTCGGTGCACTCGGCCAACCCTCTGGCTCGTAGGCATGAAAGGGTTCGCCTTAAAACAGCCTCTCTCAAACTCCCGGGGGCGGATTCACTGGAGAACTCTATGCCCTCATGGCACCAGGGTTTCACTCGAAAGGCTCGGACACCGAGACATGGAAAGCCTGCAGCACATCCAGCTTTTAAATCAGATGAACTCACGCGAAACCCCCTTCCGTTCGTACCGGAGATCGGAGCCGATGAAACGTCGTACGATGACAACGAAGAGCAGCTTCTTTATAGGGTTCCGATATTTGATCCATTTGTTGCGGAGCTCTGCGCGTCAACAAATTCGAATGAAGCTGTAACAACAGTTGCTAACGATACAGAAACTGCAGATGTCACTGGAAGCGAAACGAAAGCCTTGGTAGCTGGCCGTGGTCATGATGTGGATTCTTTACATGGATTTCTTCCATCAGACATGGATCTTGCAGAATTTGCAGCTGATGTAGAAAGTTTATTGGGTAAGGGCCTTGACAATGAATCTTTTGGCATGGAAGGTTTGGGGCTAATAGATTGTAAAGAGAAGGAGTCGGTGGAGTATTCTTTACACAGTGGAAGAGTGAAGCTTGAAGAGGAAGAAGACATAGGAGGTGTAATGGCCTGCCAAGCCGATGCAGAGATCGACATGACAAGAGAGCCCTTTGAGTTGAACTTCGACTACGGGTCTCCAGCAACATGCGAAGAGGAAGAGGAGAAAGTGGCAGTGGGAGCAATGGACATGAATAATAAAGTAGATGATCCAAAGAAGAAAAATAAGATATTATTGAGGCTTGATTATGAGGCAATCATTACAGCCTGGGCCAGCCAAGGGTCTCCATGGACCAACGGCCATCGCCCAGAACTCGACCCCGATGACTGCTGGCCTGACTGCTTGGGCACTTGTGGAATACAAGTCCATCATCCATATGGAGAGTTTGGTGGAATGGGAGAACAACAGGCAGCAATGGGAGATGGAGGTAGAGAGGCAAGAGTGTCCAGATACAGAGAAAAACGGCGAACAAGGCTCTTCTCCAAGAAAATAAGATATGAGGTTCGGAAACTGAACGCAGAGAAGAGACCCAGAATGAAGGGTAGGTTCGTGAAGAGGGCGTCCTTTGGAGGACCCGCAGCTTTTCCTTTGCTCAACAAATAA 1359 0.4849 MYPIIVPFCSRFDFGSAFCLMISEKNVANAVGGKTARACDSCIRKRARFYCAADDAFLCQACDMSVHSANPLARRHERVRLKTASLKLPGADSLENSMPSWHQGFTRKARTPRHGKPAAHPAFKSDELTRNPLPFVPEIGADETSYDDNEEQLLYRVPIFDPFVAELCASTNSNEAVTTVANDTETADVTGSETKALVAGRGHDVDSLHGFLPSDMDLAEFAADVESLLGKGLDNESFGMEGLGLIDCKEKESVEYSLHSGRVKLEEEEDIGGVMACQADAEIDMTREPFELNFDYGSPATCEEEEEKVAVGAMDMNNKVDDPKKKNKILLRLDYEAIITAWASQGSPWTNGHRPELDPDDCWPDCLGTCGIQVHHPYGEFGGMGEQQAAMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFGGPAAFPLLNK* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0337 452 Pfam B-box zinc finger 36 79 IPR000315 GO:0008270
Vvi1g0337 452 ProSiteProfiles CCT domain profile. 396 438 IPR010402 GO:0005515
Vvi1g0337 452 SMART bboxneu5 34 81 IPR000315 GO:0008270
Vvi1g0337 452 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 29 440 - -
Vvi1g0337 452 Pfam CCT motif 396 438 IPR010402 GO:0005515
Vvi1g0337 452 ProSiteProfiles Zinc finger B-box type profile. 34 81 IPR000315 GO:0008270
Vvi1g0337 452 CDD Bbox1_BBX-like 38 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0337 Vvi-Chr1 3190707 3192646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0337 25 438 C2C2-CO-like Transcription Factor Family AT1G25440 45.872 3.34e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi1g0337 zf-B_box 5.6e-08 No_clan