Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0334 ATGCCTCAAGCCTCGCCTGAGCTTTCCAGCTCCGTCAAGCTCAAGTATGTCAAGCTTGGCTACCAGTATCTTGTCAACCACATTCTCACCCTATTGCTCATACCTATCATGGTTGGTGTTCTCATTGAAGTTCTCCGTTTGGGTCCAGACGAGATTCTCAACCTTTGGAACTCTCTTCATTTTGATCTTGTCCAAATCCTTTGCTCTTCTTTTCTCATCATCTTCGCTACCACTGTCTACTTCATGTCCAAGCCACGATCCATTTATCTGGTAGACTACGCATGTTACAAGCCTCCGGTGATGCTCCGGGTTCCATTTGCGACCTTCATGGAGCATGCTAGGCTCGTCTTGAGCTCGCAGCCTAAAAGTGTTGAATTCCAAACGAGAATTCTGGAACGATCCGGGCTTGGAGAGGAGACTTGTTTGCCTCTCACGGTCCATTATATACCCCCTAGGCCGACGATGGAGGCAGCGAGAGACGAAGCGCAGCTTGTTATATTTTCTGCCATGGATTCTTTGTTGAATAAAACTGGGCTTAAGCCTAAAGATATCGATATTCTTATCGTGAATTGTAGTATCTTCTCACCAACGCCGTCTTTATCGGCTATGGTGATCAATAAGTACAAGATGAGAAGCAACATAAAGAGCTTCAATCTCTCTGGGATGGGGTGCAGTGCAGGGCTGATCTCCATTGATTTGGCTCGCGATCTTCTCCAAGTTCATCCCAATTCCAATGCTGTTGTTGTTAGCACAGAGATCATAACACCGAATTGTTACCAAGGGAATCAGAGAGCAATGCTTGTTCCCAACTGTCTATTCCGAATGGGTGGAGCTGCTATTCTTCTAACCAACCGTAGATGGGAACACAGGCGGGCAAAGTACCGTCTTGTTCACGTGGTTAGAACCCACAAAGGAGCCGACGATAAAGCTTACCGCTGCGTGATGGAAGAGGAAGACCCAGAAGGCAAAGTAGGGATATCGCTCTCCAAAGATCTCATGGTCATAGCTGGAGAGGCTCTCAAGACCAACATCACCACCACTGGCCCTCTCGTCCTTCCTGCATCAGAGCAACTTCTGTTTCTTCTCACACTCATTGGCCGCAAAATCTTCAAACAAAACTGGAAGCCTTATATCCCAGACTTCAAGCTAGCTTTCGAGCACTTCTGCATCCACGCTGGCGGGCGTGCAGTGATCGATGAACTACAGCAGAACCTGCAGCTCTCGGCCGAGCACGTGGAGGCATCACGGATGGCGTTGCACCGTTTTGGGAACACATCTTCATCATCACTATGGTATGAGCTGAGCTACATTGAAGCAAAGGGGAGGATGAAGAAGGGTGATAGAATTTGGCAGATAGCGTTCGGGAGTGGGTTCAAGTGTAACAGCGCTATTTGGAAATGCAACCGCAGCATCGAGCCACCGAGGGATGGGCCTTGGCTTGATTGTATTCACAGGTACCCAGTTCACATTCCTGAAGTGGTCAAGCTCTAG 1491 0.4836 MPQASPELSSSVKLKYVKLGYQYLVNHILTLLLIPIMVGVLIEVLRLGPDEILNLWNSLHFDLVQILCSSFLIIFATTVYFMSKPRSIYLVDYACYKPPVMLRVPFATFMEHARLVLSSQPKSVEFQTRILERSGLGEETCLPLTVHYIPPRPTMEAARDEAQLVIFSAMDSLLNKTGLKPKDIDILIVNCSIFSPTPSLSAMVINKYKMRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNCYQGNQRAMLVPNCLFRMGGAAILLTNRRWEHRRAKYRLVHVVRTHKGADDKAYRCVMEEEDPEGKVGISLSKDLMVIAGEALKTNITTTGPLVLPASEQLLFLLTLIGRKIFKQNWKPYIPDFKLAFEHFCIHAGGRAVIDELQQNLQLSAEHVEASRMALHRFGNTSSSSLWYELSYIEAKGRMKKGDRIWQIAFGSGFKCNSAIWKCNRSIEPPRDGPWLDCIHRYPVHIPEVVKL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0334 496 Gene3D - 114 466 IPR016039 GO:0016746
Vvi1g0334 496 SUPERFAMILY Thiolase-like 297 467 IPR016039 GO:0016746
Vvi1g0334 496 PANTHER 3-KETOACYL-COA SYNTHASE 61 489 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi1g0334 496 FunFam 3-ketoacyl-CoA synthase 98 467 - -
Vvi1g0334 496 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 386 466 IPR013747 -
Vvi1g0334 496 Pfam FAE1/Type III polyketide synthase-like protein 80 368 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi1g0334 496 CDD CHS_like 74 465 - -
Vvi1g0334 496 SUPERFAMILY Thiolase-like 74 291 IPR016039 GO:0016746
Vvi1g0334 496 PIRSF Very_long_ch_3-ktacl-CoA_syn 7 496 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0334 Vvi-Chr1 3167525 3169015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0334 7 496 Miscellaneous Gene Families AT1G25450 79.184 0.0 840