Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0332 ATGCCTGAGCCTCGGAGACAGCCAATGATTCAGGATATGCCTTTCAAGAGAGCTAAAGAAATTTGCTCTGACTTCAAGATGAGAAAAATCCGGGTTATATGCTATGATCCGGAAGCGACTGATTCTTCATCAAGCGAAGATGAAGGAGGAATTTCTAAAAGAGAGAAGCGTGGAAAGCGTATTGTCAGGGAAATCAATCTACCCGTTGCTGGGTCGCCGCAATCCAATGCCATCGAAACGGAGTCTTCCTGTCAAGATAGTAACAATGGTGGCAAAAACCCTAAAAAGAGGTTTTTACGAAAGCCCCCATCTTCGAAATACAGGGGCGTTCGCCAAAGGAAATGGGGCAAATGGGCTGCGGAGATTCGAGACCCCTTTAGAGGTGTTCGCGTCTGGCTGGGCACCTACAATACTCCAGAGGAGGCTGCCAAGGCTTACGAGTCAAAAAGGCTCGAGTTCGAAGCCATGGCAGCATCGGCCAACAAGAGCCAAAATGTTTCTTCCTCGGTAGCTGTCTCCCAGTCTCAATCCCATAACCCTGCTGTTTCCGACGACTCTGATAGCTTGTTATCGCACACTTCGCCTTCTTCCGTACTCGAATTAGAGACCTCGACTTCACACTATAACGGAGGCGGCCACGGCACTGATACAACCAAAGAAGGTGTCGGAACCAATCTTATCCATGCTAATGGGGCTGAGCAGCAAAAACCCATATCTGATTTTGCGGAGGAGCCATTAATGGCGCCTCCAATCGGGCAAGAGCTGAACATGGAAGCAGAGTTCGAATCATTCTTTGACGACAACAATTGGGGCAGGATTCTAGATGACTTTAACTGCTTGGATGATCTTAGAATTTTCGGTTTTGACAATGAAGAGCCCAGCGACCTTCCCGACTTCGATTTCGACCTGGGCAATGACGAGTTTGCCTGGATGGATGAACCCCTCAATATTTCATGCCCATAA 963 0.4818 MPEPRRQPMIQDMPFKRAKEICSDFKMRKIRVICYDPEATDSSSSEDEGGISKREKRGKRIVREINLPVAGSPQSNAIETESSCQDSNNGGKNPKKRFLRKPPSSKYRGVRQRKWGKWAAEIRDPFRGVRVWLGTYNTPEEAAKAYESKRLEFEAMAASANKSQNVSSSVAVSQSQSHNPAVSDDSDSLLSHTSPSSVLELETSTSHYNGGGHGTDTTKEGVGTNLIHANGAEQQKPISDFAEEPLMAPPIGQELNMEAEFESFFDDNNWGRILDDFNCLDDLRIFGFDNEEPSDLPDFDFDLGNDEFAWMDEPLNISCP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0332 320 MobiDBLite consensus disorder prediction 69 92 - -
Vvi1g0332 320 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Vvi1g0332 320 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Vvi1g0332 320 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Vvi1g0332 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 203 - -
Vvi1g0332 320 MobiDBLite consensus disorder prediction 162 196 - -
Vvi1g0332 320 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Vvi1g0332 320 SUPERFAMILY DNA-binding domain 105 156 IPR016177 GO:0003677
Vvi1g0332 320 CDD AP2 105 161 IPR001471 GO:0003700|GO:0006355
Vvi1g0332 320 MobiDBLite consensus disorder prediction 94 112 - -
Vvi1g0332 320 MobiDBLite consensus disorder prediction 47 63 - -
Vvi1g0332 320 FunFam ethylene-responsive transcription factor RAP2-11 105 164 - -
Vvi1g0332 320 Pfam AP2 domain 105 155 IPR001471 GO:0003700|GO:0006355
Vvi1g0332 320 MobiDBLite consensus disorder prediction 36 112 - -
Vvi1g0332 320 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Vvi1g0332 320 MobiDBLite consensus disorder prediction 203 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0332 Vvi-Chr1 3142982 3143944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0332 27 320 AP2-EREBP Transcription Factor Family AT1G68550 37.255 7.29e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi1g0332 AP2 1.1e-13 CL0081