Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0323 ATGGCTTCACCTCTTCTCTCTAGGGTTTCCATCTCCAACGCCACCGCTGGTAACACCATTTCCTTCTCATCTTCAGTCTCCAATGGCCTTTTGTGGCGGCGATCCATTGCATTTCCCGATAAATCTAGCCGGAAGGTCTCTACTGTTCAAGCCAAGATCAGGGAAATTTTCATGCCCGCTCTTAGCTCCACCATGACCGAGGGCAAGATCGTGTCCTGGATCAAATCCGAAGGCGACGTCCTCTCCAAAGGTGAGAGCGTCGTCGTTGTTGAGTCCGATAAGGCCGACATGGATGTCGAGACCTTCTACGATGGAATTCTCGCGGCAATTGTTGTTGGCGATGGAGAAGTTGCTCCGGTCGGTGCTCCGATCGGGCTTTTGGCGGAAACCGAAGAGGAAATCGCGGAAGCCAAAGCTAAAGCTTCAAAATCTGGTTCTTCCGCGCCTCCGCCTCCTCCAGCTCCGGCTGCCGCTTCGGCTTCACCGGCTGCTCCAGCTGTTGCCCCGCCTAAGTCGGCTGCTTCGGCGGCGGTACCTGATGGACCGAAGAAGATTGTTGCGACGCCTTTTGCGAAGAAGCTTGCGAAGCAGCATAAGGTGGATATTGGTTCGGTGGTTGGGACGGGACCATTCGGGCGGATAACGCCGGCGGATGTGGAGGCAGCCGCCGGAATTTCACCTTCCAAGAGCACTGGCGTCAATGTGGTTTCATCCGTTGCTGCTGCTCCTGCTCCTGCTCCGGTGGCTGCTGCCGCACCAAAAGCTGCTGCTTCTCCGGCTCCTCCTCCCATTCCGGGGTCGACGGTTGTTCCTTTCACTACTATGCAAGCTGCAGTGTCAAAAAATATGGTGGAAAGCCTTTCTGTTCCCACTTTTCGCGTTGGGTATCCAGTGTTAACTGATAAGCTGGATGCTCTATATGAGAAGGTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCTATGGCACTTGCTCAGCACCCAGTTGTTAATGCAAGTTGTAAAGATGGGAAGACTTTTACATATAACAGCAGTATAAACATTGCGGTAGCAGTGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGGGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATGCTATTCTGCCTCCTGGTCAGGGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAGATGGATTCTTCAGTGTTAAAAGTAAAATGCTGGTAAATGTTACAGCTGATCACCGAATTATCTATGGTGCTGACTTGGCAGCCTTCCTTCAGACCTTTGCAAAGATCGTTGAGAACCCAGAAAGCTTGACATTGTAG 1467 0.5085 MASPLLSRVSISNATAGNTISFSSSVSNGLLWRRSIAFPDKSSRKVSTVQAKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGDGEVAPVGAPIGLLAETEEEIAEAKAKASKSGSSAPPPPPAPAAASASPAAPAVAPPKSAASAAVPDGPKKIVATPFAKKLAKQHKVDIGSVVGTGPFGRITPADVEAAAGISPSKSTGVNVVSSVAAAPAPAPVAAAAPKAAASPAPPPIPGSTVVPFTTMQAAVSKNMVESLSVPTFRVGYPVLTDKLDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKTFTYNSSINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVTDKDGFFSVKSKMLVNVTADHRIIYGADLAAFLQTFAKIVENPESLTL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0323 488 Gene3D - 48 150 - -
Vvi1g0323 488 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 179 223 IPR036625 GO:0016746
Vvi1g0323 488 Gene3D - 182 224 IPR036625 GO:0016746
Vvi1g0323 488 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 186 223 IPR004167 GO:0016746
Vvi1g0323 488 Pfam Biotin-requiring enzyme 55 125 IPR000089 -
Vvi1g0323 488 CDD lipoyl_domain 55 127 - -
Vvi1g0323 488 Pfam e3 binding domain 185 220 IPR004167 GO:0016746
Vvi1g0323 488 SUPERFAMILY CoA-dependent acyltransferases 266 487 - -
Vvi1g0323 488 Gene3D - 249 487 IPR023213 -
Vvi1g0323 488 ProSiteProfiles Biotinyl/lipoyl domain profile. 53 131 IPR000089 -
Vvi1g0323 488 SUPERFAMILY Single hybrid motif 52 144 IPR011053 -
Vvi1g0323 488 MobiDBLite consensus disorder prediction 137 179 - -
Vvi1g0323 488 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 78 107 IPR003016 -
Vvi1g0323 488 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 49 152 - -
Vvi1g0323 488 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 267 487 IPR001078 GO:0016746
Vvi1g0323 488 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 42 488 IPR045257 GO:0006086|GO:0045254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0323 Vvi-Chr1 3061440 3065175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0323 18 488 Acyl Lipid Metabolism Gene Families AT3G25860 75.158 0.0 655