Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0322 ATGCCCTCAATTCTAGATTTATCTCTTCCCAAGACACCCCAACCAACTGGTCCATCACAAAATAATAAAGATGCATATATTGACAGCCTTAAGGACATTCAGTTACAAAGGTTGGGTCATTTTACCAAAGAATTTTTGTGGTTGGGATCTCCATGGACGTGCAGGAAAAGACGGAACCATTATCAGTCCTTTCGCCGTAATGGAATTAAAATCTCAGTTCATGACTTTGTGTATGTACTGGCTGAAGAGGATAAGCGTCTTGTTGCTTACTTGGAAGATATGTATGAGGACTCTAGAGGCAACAGGATGGTTGTGGTACGATGGTTTCATAAAATTGATGAGGTTGGTATTGTTTTGCCTCTCAATTTTAATGACAGAGAGATTTTCTTTTCTCTTTGTCATCAAGATCTCAGCATTGAATGCATAGATGGATTGGCAACTGTCCTTGGTCCCCAGCATTTTGAGAAATTTCTGAATGAGGCTACACATACTCAGTTGGAACCATTTGTTTGCCACAAACAGTTTGATAATGATGAGGTCAAGCCCTTTGACATAACACAGGTGAAAGGTTACTGGAAACAGGAGATACTCAGATATATGTACACTTCTACTCTAATGCCTGATGTAAGATCTCAGTCATCAGATGATGTTGGCGTTGAAGGAAACCTCAATGACGCTTCAGGGAGCAGACCCAACAAGAGGCATTGCCGGTCAGAAGATGCTGATGCATGCTTGCAATTGACTAACAAAGAAGAGTCAGTTGATACATCTCGTGCAAATTTTCAAAATATCAGTAACAGTTTGATTGATTACAGAAATGAACCTGAAACATGCGCTCTAAAAGATGGCTCCGCTGTCCCTTTTATACATAGAAAAGAGGCTATTATACAAAAGCTTCCGCAGTTTTTGGCAATAGGCTCACAAGTTGAAGTGCTCTCTCAGGACAGTGGCATTAGAGGCTGTTGGCTTAGAGCTTTGATCATCAAGAAGCACAGATGTAAAGTGAAGGTTCGGTATCAAGATATTATGGATGCGGCTGATGAAACTAGCAATCTAGAGGAATGGATTTTAGCATCTAGGGTCGCAGTTCCTGATGAATCGGGTCTTCGGATTTGTGGGAGGACAACTATTCGCCCACCACCCCCTGGTTCTAACAAAGGCAGAGTGTCATGGGCTTTTGATGTTGGCTCTGTTGTGGATGCATGGTGGCATGATGGTTGGTGGGAAGGAATTGTAGTTCAGAAAGAATCTGAAGACAGGATCCATGTTTATTTCCCAGGAGAAAAGCAAGAATTAGTCTTTGGTCGCAGTGACTTGAGACATTCTGAGGAATGGTATGAAAACAGTTGGAAGCATATGAAGGAGAGGCCAGATCTTGTGACCTCAATATTATCTGGGAGAGAATCAAAGCATGTTGTTAGTAAGTCTTCCGATGGCAAACTAGCACAAACTGCAATATGTGATATTGGATGGTCAAAGAAGGATGAAGGTGGATGTGTAAACTCTCAGTTGGACTCAGGAAATGATAAATTAAAAGGCTTGGGATTCGTTCCAGATCTTTTGAAGGATGATACGCTATCCCAGTTGAAGTGGAAGACATCAAGGAAGAGAAGACGGGTGAGTGGAGGCTCTGTTCAGAAGCTACACGTCAATGTTAATACCAGTAAAAGCGCCTCAGAAATTATGGGATCTCATGCTTGTGATAGATTTTTTATTCCCAAATCCTTGAAAGTTGATTGTGAGAACTGCAAGTATGTGGGGGATTCCCTGTTTAGTTCTTCCGTTGTGCCGCCTCTAACAAACTTGGTTATGTCTAGGTGA 1821 0.4174 MPSILDLSLPKTPQPTGPSQNNKDAYIDSLKDIQLQRLGHFTKEFLWLGSPWTCRKRRNHYQSFRRNGIKISVHDFVYVLAEEDKRLVAYLEDMYEDSRGNRMVVVRWFHKIDEVGIVLPLNFNDREIFFSLCHQDLSIECIDGLATVLGPQHFEKFLNEATHTQLEPFVCHKQFDNDEVKPFDITQVKGYWKQEILRYMYTSTLMPDVRSQSSDDVGVEGNLNDASGSRPNKRHCRSEDADACLQLTNKEESVDTSRANFQNISNSLIDYRNEPETCALKDGSAVPFIHRKEAIIQKLPQFLAIGSQVEVLSQDSGIRGCWLRALIIKKHRCKVKVRYQDIMDAADETSNLEEWILASRVAVPDESGLRICGRTTIRPPPPGSNKGRVSWAFDVGSVVDAWWHDGWWEGIVVQKESEDRIHVYFPGEKQELVFGRSDLRHSEEWYENSWKHMKERPDLVTSILSGRESKHVVSKSSDGKLAQTAICDIGWSKKDEGGCVNSQLDSGNDKLKGLGFVPDLLKDDTLSQLKWKTSRKRRRVSGGSVQKLHVNVNTSKSASEIMGSHACDRFFIPKSLKVDCENCKYVGDSLFSSSVVPPLTNLVMSR* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0322 606 MobiDBLite consensus disorder prediction 9 23 - -
Vvi1g0322 606 SMART BAH_4 69 186 IPR001025 GO:0003682
Vvi1g0322 606 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 237 562 - -
Vvi1g0322 606 MobiDBLite consensus disorder prediction 212 235 - -
Vvi1g0322 606 SMART agenet_At_2 301 367 IPR014002 -
Vvi1g0322 606 SMART agenet_At_2 391 447 IPR014002 -
Vvi1g0322 606 Gene3D - 41 185 IPR043151 -
Vvi1g0322 606 Pfam Agenet domain 306 382 IPR008395 -
Vvi1g0322 606 CDD Tudor_Agenet_AtDUF_rpt1_3 303 382 - -
Vvi1g0322 606 Pfam BAH domain 70 178 IPR001025 GO:0003682
Vvi1g0322 606 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g0322 606 ProSiteProfiles BAH domain profile. 69 186 IPR001025 GO:0003682
Vvi1g0322 606 CDD Tudor_Agenet_AtDUF_rpt2_4 395 441 - -
Vvi1g0322 606 MobiDBLite consensus disorder prediction 212 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0322 Vvi-Chr1 3047298 3049971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0322 296 449 PHD Transcription Factor Family AT5G58610 26.875 3.02e-08 55.1