Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0320 ATGGCCAGCGATACCCCGGATTCCAAACGCAAGCACCGAAGATCCTCTGATGATGATGCCGATGACTCCTCCAAGCGCCGTAAGCACCGTCATCACCACCACCATCGCCGCCACCGCCATAGCAGCCGGAAACACGAAGCTGAGGGGGAAGGAAAACATGAAGCCGAAGGCGACGGAAAACACGCGGCCGAAGATTTTGTGGCTCTTCCATCACCACAGCCCGCTGCTACTGTCGTTGCTGTTGTATCGGGTTCCAATTGGAGACCCGATTATGATATGGAAGAAGGTGAGATTGTCGAAGAAGAGGGGTTTGGGGCTGGTGGTGATGCAATTGAGAAGAGGAAATCTGATTCTGATGTTGAGTCTGGCGAGATTAAAGCACTGGAAGTTCGTGATGTATCTGATGTTCAAAATCTGGATGGTCATATGGCAAATGGTGATCAACAAGAATTTTGCGCAATGGCTAATAGTAGAGGGAAAGTTGCTAGAAATTTGAATACATTGCAAGAGTATAGGAGTGATGATGATTTGGTGACTGATTCAGATTTAGTAAATGAGACAGGCAAATCAGACTATGAAGCTAAAATTGGTAATAAGATCCATGGTGAGGATGGTTTGTCAAGGCATCCAAGTGCCAAGCATTACGAAGAATTGTTTTCGATTGGTAGTCCAGATGGTGATATGAATAGGGATGCTCGCCATGAATCTCATCGGAAGAACAATTCGGGATGTGAATCTCCTGTAAAAGGATATGGCAAGACAGAGAGTTATTATGAGGTTGATAAAAGTGAATTACAAAACCAGAGAAAATCATTGTCATCTGAAAGTGCAGGGGACAAATACAAAAAGTTGGCACACTCACCAACTCATGATCGATATCGAGATAAGGTCCATATGAGGGGCAGATCAAGGTCACATGATCATGCTAGGGAGCGGTCTCGTTCCCAAAGCATTTTGCAAGATGTGGCCCTATCTAAAGCAACCCACCATCAAGAATGGAATGCCTCAAGTTATGCTGGTAACAGAAGGACTGACAATGATACAGATGAAGAAATGGCTCTAAGAAGAAGGGATTATCGACATCCTAGCCGAGATTTGGTGAGGGATGAGGAAAGAGAGCGTAGTAGTAGTCATAGCAGACAAACTCAGAGAGGGGACAAACATCAAAGTCGGGAGACATGGGACATGGCTAAGGCAGGAAGGGAGATGGACTGGGAAAGGCAAAGGGAGAGAGAGCAAGACAGAAGTAGGGAGAGGGAGAGGGAGAGGAACCGGGAAAGGGATAGAAAAAGGGAGAAGGAACGGGATAGGAGCATGGACAGGGAGATGGATAGGAATAGGAAAAGGGAGAAGGATAGGGGCACAGACAGGGAGATGGACAGGGGTAGGAAACAGGAGAGAGAAAGAGATAGGAGCTGGGACAGGGACAGGGCAAGGGAGAGAGATAGAAATAGAAATAGGGACATAGATTGGGAGAACGACAGGGATAGGGCCAGGGACAGGAAATCAGAGAGGGGGAGTGGAAGGGACAGAAGTAGGGATAAAGTTAGGGATTCCGAGAGTGATAGAGTTAGCAGGCACCATAAATACGAAACTCTTAATGATGGTTATGGAAATCGAGATAGGTATGGTGATTCCTGGTATCTAAGACATGATGAGACAGAACATCAGAGGCATAGAACAAGGAAGAATGATGAAGAAAAAGGTCTCAGTTCTAAGAATGATTCGCTTGAAGGGAATGGTGACAAACTGAATAGAGATGAAGATGAGCATGAAGACTACCAGGAAAGGGTTACATTGCAACTAGCAGAAAAGGAAGAGGAAGAGTTTAACCGAATTAAGGAGGAGAGTAGAAGGCGAAGACAAGCCATCCTAGAAAAATATAAAAGTCAACACTCACAGCAACAACTTGCATCTCATACAGAGGATACAGGGAAAGATAAGGAATCTGTGGAGCAGCCCAGTGAGACAATAGTTGCTGAAACTATGGTCCCAGAGGTTCCCGATGGGAAGAATGATGGTACAGATACCTATGATGCTGATCCATCATTTTCTGTGGGGAAGTCACCTCCACAAAATGGACTTTCTGCCTCTGAGAGGACATCTGGTGCCGGGGGTCTGGGTGAGGGCACTCCAAAGAGTGAAAGACCAGATGATATGTTCTGTGATGATATTTTTGGAGAGTCACCAGCAGGAGTTCGTAAATCGGGAAGAGGAGATGGCTTACTAATTGAAAGGAGTGGTCTTCATGACAATTGGGATGATGCAGAGGGATACTATAGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGCTGGGAATGGTGAGCCAGAAGAAGTGGCTATAAAAATCATACGAAATAATGACACAATGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTTCTAAAGAAGTTCGGTCGTAATATTGGCCTTAAATTAACTGCTGTAAGGGCATATGCTAAACAGCTTTTCATTGCTCTCAAGCATCTTAGGAACTGTGGCGTTCTGCATTGTGATATAAAGCCAGATAATATGCTGGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAATTCTAGGCTTGCCTTATGACCATCCCATGGATATTTGGTCTGTTGGTTGTTGTTTGTATGAGCTTTATACGGGAAAAGTTCTTTTTCCGGGTCCTTCAAACAATGACATGCTTCGGCTTCACATGGAGTTGAAGGGTCCTTTTCCAAAAAAGATGCTTCGAAAGGGAGCATTTACTGATCAGCACTTTGATCAGGACCTTAATTTCCATGCCACTGAGGAGGATCCTGTCACAAAGAAGACAATAAAAAGGCTGATTATGAACATAAGGCCAAAAGATATTGGTACAATAATTTCAAGCTCTCCTGGTGAGGACCCAAAGATGGCAGTGAATTTCAAAGATCTTTTAGAAAAAATATTTGTGTTGGATCCGGAGAAGAGGATGACAGTCTCACAAGCATTGTGTCATCCATTCATCACGGGCAAGTGA 3273 0.44 MASDTPDSKRKHRRSSDDDADDSSKRRKHRHHHHHRRHRHSSRKHEAEGEGKHEAEGDGKHAAEDFVALPSPQPAATVVAVVSGSNWRPDYDMEEGEIVEEEGFGAGGDAIEKRKSDSDVESGEIKALEVRDVSDVQNLDGHMANGDQQEFCAMANSRGKVARNLNTLQEYRSDDDLVTDSDLVNETGKSDYEAKIGNKIHGEDGLSRHPSAKHYEELFSIGSPDGDMNRDARHESHRKNNSGCESPVKGYGKTESYYEVDKSELQNQRKSLSSESAGDKYKKLAHSPTHDRYRDKVHMRGRSRSHDHARERSRSQSILQDVALSKATHHQEWNASSYAGNRRTDNDTDEEMALRRRDYRHPSRDLVRDEERERSSSHSRQTQRGDKHQSRETWDMAKAGREMDWERQREREQDRSRERERERNRERDRKREKERDRSMDREMDRNRKREKDRGTDREMDRGRKQERERDRSWDRDRARERDRNRNRDIDWENDRDRARDRKSERGSGRDRSRDKVRDSESDRVSRHHKYETLNDGYGNRDRYGDSWYLRHDETEHQRHRTRKNDEEKGLSSKNDSLEGNGDKLNRDEDEHEDYQERVTLQLAEKEEEEFNRIKEESRRRRQAILEKYKSQHSQQQLASHTEDTGKDKESVEQPSETIVAETMVPEVPDGKNDGTDTYDADPSFSVGKSPPQNGLSASERTSGAGGLGEGTPKSERPDDMFCDDIFGESPAGVRKSGRGDGLLIERSGLHDNWDDAEGYYSHRFGEILDGRYEITAAHGKGVFSTVVRAKDLKAGNGEPEEVAIKIIRNNDTMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFSGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYELYTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHATEEDPVTKKTIKRLIMNIRPKDIGTIISSSPGEDPKMAVNFKDLLEKIFVLDPEKRMTVSQALCHPFITGK* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 101 122 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 227 242 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 316 342 - -
Vvi1g0320 1090 SMART serkin_6 772 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0320 1090 Coils Coil 416 436 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 219 733 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 686 700 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 343 627 - -
Vvi1g0320 1090 FunFam serine/threonine-protein kinase PRP4 homolog 743 831 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 1 71 - -
Vvi1g0320 1090 Gene3D Phosphorylase Kinase; domain 1 742 831 - -
Vvi1g0320 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Vvi1g0320 1090 Coils Coil 600 623 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 43 63 - -
Vvi1g0320 1090 Gene3D Transferase(Phosphotransferase) domain 1 832 1088 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 106 122 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 26 42 - -
Vvi1g0320 1090 Pfam Protein kinase domain 776 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0320 1090 FunFam Serine/threonine-protein kinase PRP4 homolog 832 1088 - -
Vvi1g0320 1090 SUPERFAMILY Protein kinase-like (PK-like) 759 1089 IPR011009 -
Vvi1g0320 1090 ProSiteProfiles Protein kinase domain profile. 772 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0320 1090 PANTHER DUAL SPECIFICITY PROTEIN KINASE 425 1088 - -
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 275 315 - -
Vvi1g0320 1090 CDD STKc_PRP4 771 1087 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vvi1g0320 1090 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0320 Vvi-Chr1 3030905 3040509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0320 779 1087 MAP Kinase Gene Family AT4G01370 33.648 7.14e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vvi1g0320 Pkinase 6.6e-47 CL0016