Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0313 ATGGCTATGGTGGACGAGCCACTTTATCCAATCGCTGTTCTGATAGATGAGTTGAAAAATGCTGACATCCAGCTGCGGTTGAACTCAATTCGTCGGCTATCCACAATTGCACGTGCACTGGGGGAGGAGCGAACCCGAAATGAATTGATCCCATTTCTTAGTGAGAACAATGATGATGATGATGAGGTGCTTCTTGCAATGACTGAAGAATTGGGAGTGTTCATTCCTTATGTTGGGGGACTGGAGCATGCCTGTGTTTTGCTACCACCTTTGGAAACTCTTTGCACTGTGGAGGAAACCCGTGTGAGGGATAAAGCCGTGGAGTCTTTGTGTAGAATTGGTTCTCAAATGAAGGAAAATGATTTGATTAACTGGTTTATTCCTTTGGTGAAGAGACTGGCATCTGGTGAATGGTTTACTGCTCGAGTTTCTGCATGTGGACTGTTTCATATTGCTTACCCAAGTGCCCCAGAGATGTTAAAGATGGAGTTGCGGGCAATATACAGTCAATTGTGTCAAGATGACATGCCCATGGTGAGGAGATCTGCCGCATCAAGCCTGTGGAAGTTTTCTGCAACAGTTGAGCCTGTTCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATGATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAAGTTATTAGAGCCCCAGGAATGCATTGCACGTATTCTCCCTGTTATTATCAGCTTTTCTCAGGACAGATCTTGGCGTGTTCGCTACATGGTTGCAGATCAATTATATGAGCTTTGTCATGCTGTAGGGCCTGAAGCTACCAGAACGGACTTGGTTCCCGCTTATATGCGGTTACTTCGAGATAATGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGGAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTTTTAATGGGAATGGCTCCCGTCTTAGGAAAGGATGCAACAATTGATCAACTTCTTCCAATTTTTCTTTCTCTTTTGAAGGATGACTTTCCTGATGTACGACTAAATATCATTAGCAAGCTTGATCAAATAAATCAGGTTATTGGAACTGATCTATTGTCCCAATCCCTATTACCGGCCATTGTTGAGCTTGCAGAGGATAGACATTGGAGGGTTCGACTTGCAATAATAGAGTATATTCCTTTGTTGGCAAGTCAGTTGGGTATAAAGTTTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGGTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAGAATTTGGTCCTGACTGGGCAATGCAGCACTTAATTCCACAGGTCTTGGAGATGATTAACAATTCACACTATTTGTATCGGATGACTGTTCTACGGGCAATTTCCCTACTTGCCCCTGCCATGGGCGCAGAAATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGGGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCCTATAGTTGATCATTCTGTGGTGGAAAAGACGATCCGACCGTGTTTGGTTGAGCTTAGTGAGGACCCAGATGTAGATGTCCGCTTCTCTGCCAACCAAGCAATCCATGTGATTGATCACGTCATGATGTCTAGCTAG 1764 0.4399 MAMVDEPLYPIAVLIDELKNADIQLRLNSIRRLSTIARALGEERTRNELIPFLSENNDDDDEVLLAMTEELGVFIPYVGGLEHACVLLPPLETLCTVEETRVRDKAVESLCRIGSQMKENDLINWFIPLVKRLASGEWFTARVSACGLFHIAYPSAPEMLKMELRAIYSQLCQDDMPMVRRSAASSLWKFSATVEPVHLKNDIMTIFENLTQDDQDSVRLLVVEGCATLGKLLEPQECIARILPVIISFSQDRSWRVRYMVADQLYELCHAVGPEATRTDLVPAYMRLLRDNEAEVRIAAAGKVTKFCQILNPELAIHHILPCVKELSLDSSQHVRSALASVLMGMAPVLGKDATIDQLLPIFLSLLKDDFPDVRLNIISKLDQINQVIGTDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGIKFFDDELGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPDWAMQHLIPQVLEMINNSHYLYRMTVLRAISLLAPAMGAEITYSKLLPVVISASNDRVPNVKFNVAKVLQSLIPIVDHSVVEKTIRPCLVELSEDPDVDVRFSANQAIHVIDHVMMSS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 87 124 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Vvi1g0313 587 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 581 - -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Vvi1g0313 587 Gene3D - 2 582 IPR011989 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Vvi1g0313 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 582 - -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Vvi1g0313 587 Pfam HEAT repeats 361 461 - -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Vvi1g0313 587 SUPERFAMILY ARM repeat 8 579 IPR016024 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Vvi1g0313 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0313 Vvi-Chr1 2968052 2979342 Dispersed/Wgd