Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0308 ATGCAAAGCTTCAAAGCAGCTCCCACCGCCTCCGATATAGGCGACGAAAGTAGCCGAAATCAAACGCGTTTTCCGGATCTTGGAGAGCTTGAACAGTCCGCTGCGTTTCATCACGACGATGCTGTTGATTTAAGTTCAAGCGCCATGTTTCGCTTGAAGTCGGGCAATGTAGGTGTTGTTTCTCCGTTACATTTTGGAGGCTTGAACACGAACATTGGCCCGTCGGACATGGTTTCAACATCAGGAACAGGAGTGGTGGACACAGGGCAGCTCATGTTCTCAAAGGGGACGGCTGAGACGGCGACGGCGACGGTAGCTTCGTTGGGAAATGGGCACTTTGAGAACTGGGGTGAGTCTGGCATGGGTGACAACAGCCAACAGACTGACACTTCCACAGATGTTGACACTGATGATAAAAACCAGTATCATGGAGTCCAACATGGAGCACTTGTAGCTGTGGATTCCATGGACCAATCCAAGGGGAAAACTGGAGACCAGAAGACACTTCGTAGGCTGGCTCAGAATCGAGAGGCTGCAAGGAAGAGTCGTCTGAGGAAGAAAGCATATGTCCAGCAGCTGGAGTGTAGCCAACTCAAGCTTACACAGTTAGAGCAAGAGCTTCAACGAGCACGCCAGCAGGGTGTTTTTATTGCGACTGGATTTTCTGGGGATCAGAGTCATTCCATGGGTGGAAATGGGGCTTTAGCATTTGACATGGATTATGCTCGCTGGCTTGATGAACATCAGCGGCTGATCAATGACCTGAGATCAGCTGTAAATTCTCATGTGGGGGATAATGAACTACGCATTCTTGTTGATGGTGTAATGGCACATTATGATGAAATATTCAGGCTAAAGAGCATGGGGGCAAAATCTGATGTGTTTCACATGCTTTCTGGCATGTGGAAGACGCCTGCAGAGAGATGTTTCATGTGGTTGGGTGGATTCCGATCATCTGAACTTCTGAAGATACTTGGGAACCAACTTGAACCTTTAACAGATCAGCAGCTGATGGGCATATGTAATCTACAACAGTCCTCACAGCAAGCTGAGGATGCATTATCACAAGGAATGGAAGCACTACAACAATCTCTTGTAGAAACACTTTCCTCTAATTCTCTGGGTCCTGCTGGTTCGGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGGCAAGCTGGCCACCCTCGAAAATTTCCTTCACCAGGTAATATTTTGCCATTGGATTTCATATCTTATTATTTATTTATTTGGCTTTCTGTAA 1272 0.4701 MQSFKAAPTASDIGDESSRNQTRFPDLGELEQSAAFHHDDAVDLSSSAMFRLKSGNVGVVSPLHFGGLNTNIGPSDMVSTSGTGVVDTGQLMFSKGTAETATATVASLGNGHFENWGESGMGDNSQQTDTSTDVDTDDKNQYHGVQHGALVAVDSMDQSKGKTGDQKTLRRLAQNREAARKSRLRKKAYVQQLECSQLKLTQLEQELQRARQQGVFIATGFSGDQSHSMGGNGALAFDMDYARWLDEHQRLINDLRSAVNSHVGDNELRILVDGVMAHYDEIFRLKSMGAKSDVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNQLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVETLSSNSLGPAGSGNVADYMGQMAIAMGKLATLENFLHQVIFCHWISYLIIYLFGFL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0308 423 SMART brlzneu 163 234 IPR004827 GO:0003700|GO:0006355
Vvi1g0308 423 Pfam bZIP transcription factor 167 206 IPR004827 GO:0003700|GO:0006355
Vvi1g0308 423 PANTHER TRANSCRIPTION FACTOR TGA9 105 405 - -
Vvi1g0308 423 CDD bZIP_HBP1b-like 167 219 - -
Vvi1g0308 423 Coils Coil 186 213 - -
Vvi1g0308 423 Gene3D - 166 214 - -
Vvi1g0308 423 SUPERFAMILY Leucine zipper domain 167 210 IPR046347 GO:0003700|GO:0006355
Vvi1g0308 423 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 209 IPR004827 GO:0003700|GO:0006355
Vvi1g0308 423 FunFam BZIP family transcription factor 166 215 - -
Vvi1g0308 423 Pfam Seed dormancy control 252 325 IPR025422 GO:0006351|GO:0043565
Vvi1g0308 423 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g0308 423 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 170 185 IPR004827 GO:0003700|GO:0006355
Vvi1g0308 423 ProSiteProfiles DOG1 domain profile. 234 423 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0308 Vvi-Chr1 2941266 2946075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0308 3 405 bZIP Transcription Factor Family AT1G68640 59.135 1.20e-150 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi1g0308 DOG1 3.3e-31 No_clan