Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0306 ATGGCGGAAAAGGGGTTTCTTCTTTGCGTTTTGTTTGCTTTCTTCTGCACTTGGGGTGTCTCTCTTGTTAACGCTCGCCGCTTAAGCTTACCCAGAACTACGGTCCTCGACGTCTCTGGTTCCATTCGGGAAAGCTTGAATGTTCTCTCTTTGAACCCTCAATATGAGCAAATGGAGTTTCAGCACCAAGAACGGAGTTTTCCGTCTTCCTCTTCTTCTTCGTCACTGACTCTGTCTCTACATTCGCGAACTTCTATTCACAAATCTTCGCACAAAGACTACAAGTCTCTGGTTTTAGCCCGACTCGAGCGAGACTCAGACCGAGTCAGATCTCTGGCGACCAGAATGGATCTGGCCATTGCGGGCATTACCAAGTCGGATCTCAAACCAGTTGAGAAAGAGCTGGAAGCTGAAGCTCTTGAGACTCCGCTTGTCTCCGGAGCGAGTCAGGGAAGTGGTGAGTACTTCTCACGAGTCGGAATCGGTAGCCCACCCAAACATGTCTACATGGTTGTCGACACCGGCAGTGACGTCAACTGGGTACAATGCGCACCCTGCGCCGACTGCTACCAGCAAGCCGACCCCATATTCGAGCCGTCTTTTTCCTCCTCCTACGCGCCCCTCACTTGCGAAACCCATCAGTGCAAGTCGCTCGACGTCTCCGAGTGCCGGAACGACTCGTGCCTCTACGAGGTCTCCTACGGCGATGGATCGTACACCGTTGGAGACTTCGCCACTGAGACGATTACTCTGGACGGTTCCGCTTCACTGAACAATGTCGCCATCGGCTGTGGCCACGACAACGAAGGCTTGTTCGTAGGCGCCGCCGGGTTACTCGGACTCGGCGGCGGCTCGCTGTCGTTCCCTTCTCAAATCAACGCTTCTTCGTTCTCCTACTGCCTCGTGAACCGTGACACAGACTCAGCCTCGACCCTCGAGTTCAACTCACCGATCCCTTCTCACTCAGTTACTGCTCCCTTACTCAGGAACAACCAGCTCGACACATTCTATTACTTAGGAATGACGGGAATCGGTGTCGGCGGGCAGATGCTGTCGATTCCTCGATCATCTTTCGAGGTGGACGAAAGCGGAAATGGAGGAATCATAGTCGACTCGGGGACAGCCGTGACTCGGTTACAGAGCGACGTGTACAACTCGCTCCGCGACTCGTTCGTCAGAGGCACCCAACACTTACCGTCTACTAGCGGTGTGGCGTTGTTCGACACTTGTTACGATCTATCATCGAGGTCTAGCGTGGAGGTCCCAACGGTGTCGTTTCACTTTCCGGATGGTAAATATTTAGCATTACCGGCTAAAAATTACCTAATACCGGTTGACTCAGCGGGAACCTTTTGCTTCGCATTTGCTCCCACCACCTCAGCGTTGTCAATAATTGGGAATGTGCAGCAGCAGGGGACACGTGTCAGTTACGATCTCAGCAACTCGCTCGTTGGATTCTCCCCCAACGGGTGCTAG 1476 0.5325 MAEKGFLLCVLFAFFCTWGVSLVNARRLSLPRTTVLDVSGSIRESLNVLSLNPQYEQMEFQHQERSFPSSSSSSSLTLSLHSRTSIHKSSHKDYKSLVLARLERDSDRVRSLATRMDLAIAGITKSDLKPVEKELEAEALETPLVSGASQGSGEYFSRVGIGSPPKHVYMVVDTGSDVNWVQCAPCADCYQQADPIFEPSFSSSYAPLTCETHQCKSLDVSECRNDSCLYEVSYGDGSYTVGDFATETITLDGSASLNNVAIGCGHDNEGLFVGAAGLLGLGGGSLSFPSQINASSFSYCLVNRDTDSASTLEFNSPIPSHSVTAPLLRNNQLDTFYYLGMTGIGVGGQMLSIPRSSFEVDESGNGGIIVDSGTAVTRLQSDVYNSLRDSFVRGTQHLPSTSGVALFDTCYDLSSRSSVEVPTVSFHFPDGKYLALPAKNYLIPVDSAGTFCFAFAPTTSALSIIGNVQQQGTRVSYDLSNSLVGFSPNGC* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0306 491 Gene3D Acid Proteases 130 314 IPR021109 -
Vvi1g0306 491 ProSiteProfiles Peptidase family A1 domain profile. 155 487 IPR033121 -
Vvi1g0306 491 SUPERFAMILY Acid proteases 149 491 IPR021109 -
Vvi1g0306 491 CDD cnd41_like 154 491 IPR033873 -
Vvi1g0306 491 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 170 181 IPR001969 GO:0004190|GO:0006508
Vvi1g0306 491 Gene3D Acid Proteases 315 491 IPR021109 -
Vvi1g0306 491 FunFam aspartyl protease family protein 2 132 314 - -
Vvi1g0306 491 Pfam Xylanase inhibitor C-terminal 337 487 IPR032799 -
Vvi1g0306 491 PANTHER ASPARTYL PROTEASES 66 485 IPR001461 GO:0004190|GO:0006508
Vvi1g0306 491 Pfam Xylanase inhibitor N-terminal 155 314 IPR032861 -
Vvi1g0306 491 FunFam Aspartyl protease family protein 2 315 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0306 Vvi-Chr1 2925112 2926587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0306 145 491 Miscellaneous Gene Families AT1G77480 26.702 1.20e-24 104