Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0298 ATGGATTTTTCAGACAAAATGCAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTCATGGACAATCTGAATGTTCTGAGCAGACCTCTAGCGATGGTCCTGTGTTGGAAGAATTTATCCCAATAAAAAAGACGTCTGATGATGAAGATGAACAACAATCTCACCAGCCTAATGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCTTCCACCCTTTCAAGAGAGACAAGGCAGTTGGCACCAACCCAACATCGGCCCCGTCTGCGGCAACCAGTTCTACGGCTGAAACGGCCACCGGATGCAGCAGTGGAAGCAGAAAAGAAGAGAAAGAAGGGCAGTCTCAGAGAAAGGCCAGGCGGTGTTGGTCGCCGGAGTTGCATAGGCGGTTCTTGCATGCCCTTCAACAGCTTGGTGGTTCTCATGTTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGGTTGCACACAAGAAGACCAAACCCGGCCATTCAACATAATGGGAACCCACAAGCACCCCAATTTGTAGTGGTGGGAGGCATATGGGTTCCACCGCCGGAGTATACAGCAGTGGCTGCAACTACATCATCAGGAGAAGCAACCGGAGTCACCACCGCCAATGGAATTTATGCACCGGTGGCTTCAGTGCCACCTTCACACCCACAGGGGTCAACTCAAAGGCAACAACCGATGAAGCCCAAAAAGTCACAATCCGAAGAAAGGGGCAGCCACAGTGAAGGGGGTGTTCAGTCTAATTCCCCAGCCACGTCTTCCTCCACCCATACCACCACAACTTCCCCTGTGTTTTAA 1089 0.4876 MDFSDKMQRCHDYIEALEEERRKIQVFQRELPLCLELVSQAIESCRQQMSGTTQEYFHGQSECSEQTSSDGPVLEEFIPIKKTSDDEDEQQSHQPNDNKDKNNDKSGKKSDWLRSVQLWNQTPDPPVKEDTPKKIPSMEVKKNGGAFHPFKRDKAVGTNPTSAPSAATSSTAETATGCSSGSRKEEKEGQSQRKARRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIQHNGNPQAPQFVVVGGIWVPPPEYTAVAATTSSGEATGVTTANGIYAPVASVPPSHPQGSTQRQQPMKPKKSQSEERGSHSEGGVQSNSPATSSSTHTTTTSPVF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0298 362 MobiDBLite consensus disorder prediction 311 325 - -
Vvi1g0298 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 249 IPR006447 GO:0003677
Vvi1g0298 362 MobiDBLite consensus disorder prediction 158 179 - -
Vvi1g0298 362 SUPERFAMILY Homeodomain-like 192 252 IPR009057 -
Vvi1g0298 362 Pfam Myb-like DNA-binding domain 196 247 IPR001005 -
Vvi1g0298 362 MobiDBLite consensus disorder prediction 336 362 - -
Vvi1g0298 362 MobiDBLite consensus disorder prediction 304 362 - -
Vvi1g0298 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 251 IPR017930 -
Vvi1g0298 362 Gene3D - 193 251 - -
Vvi1g0298 362 FunFam Myb family transcription factor 193 251 - -
Vvi1g0298 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 333 IPR044787 GO:0003700|GO:0006355
Vvi1g0298 362 MobiDBLite consensus disorder prediction 80 197 - -
Vvi1g0298 362 MobiDBLite consensus disorder prediction 180 197 - -
Vvi1g0298 362 MobiDBLite consensus disorder prediction 80 111 - -
Vvi1g0298 362 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0298 Vvi-Chr1 2781646 2783311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0298 1 307 G2-like Transcription Factor Family AT1G68670 54.683 1.52e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi1g0298 Myb_DNA-binding 1.6e-06 CL0123