Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0297 ATGCAGACTCCGTCTTTCGCCTGCATATCCTCCAGTGAGAGTGCCTGTTTAGAAGCTGATGAAGAAGATGAGGATTCCATACTTCTTTCACTTTGCCCTCCTGGACAGAGCACCTCCAAACGTGCCATCTATCATCCATCCTCAAGCAAGCCACAGAATTATCAAAACACTAATAGGGAAGATGGTGTAACGGTAGCTCTTCACATCGGTCCTCCAAATGCCTGTGCCAGCACAAGCAACCCTAATAACATTAATGGTGGTGATCCCGTTGAAGGACAGTACTGGATTCCCTCGCCGGCACAAATCCTTGTAGGCCCAACACAGTTCTCTTGCACTGTCTGCAACAAAACATTCAATCGATACAACAACATGCAGATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTTGCGCTCAGGGCTGTAAGAACAATATAGAGCACCCAAGATCAAAACCACTGAAGGATTTCAGAACTCTGCAGACACATTACAAGCGGAAGCATGGAGCGAAGCCTTTTTCTTGCCGGAAATGCGGGAAAGCTTTTGCAGTGAGGGGGGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTTTTGTATCTGTGGGTCAGATTTTAAGCACAAGAGGTCTCTTAAGGACCATGTTCGCGCCTTTGGAGATGGACATGCTCCGCACAGTGTGGAGATGTATGGTGTTGAGGAAGAAGATGATAACGATGATGACCATGGAAATGGAGGCCATGGTTCCGTACTATGTTAA 828 0.4722 MQTPSFACISSSESACLEADEEDEDSILLSLCPPGQSTSKRAIYHPSSSKPQNYQNTNREDGVTVALHIGPPNACASTSNPNNINGGDPVEGQYWIPSPAQILVGPTQFSCTVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGTKPASSILRLPCYCCAQGCKNNIEHPRSKPLKDFRTLQTHYKRKHGAKPFSCRKCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHSVEMYGVEEEDDNDDDHGNGGHGSVLC* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0297 275 SUPERFAMILY beta-beta-alpha zinc fingers 179 214 IPR036236 -
Vvi1g0297 275 SMART c2h2final6 194 214 IPR013087 -
Vvi1g0297 275 SMART c2h2final6 109 131 IPR013087 -
Vvi1g0297 275 SMART c2h2final6 157 189 IPR013087 -
Vvi1g0297 275 Gene3D Classic Zinc Finger 108 131 - -
Vvi1g0297 275 FunFam Zinc finger protein WIP2 163 245 - -
Vvi1g0297 275 SUPERFAMILY beta-beta-alpha zinc fingers 105 130 IPR036236 -
Vvi1g0297 275 Pfam Zinc finger, C2H2 type 109 128 IPR013087 -
Vvi1g0297 275 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vvi1g0297 275 MobiDBLite consensus disorder prediction 36 57 - -
Vvi1g0297 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Vvi1g0297 275 PANTHER ZINC FINGER PROTEIN WIP2 18 260 IPR043584 GO:0003700|GO:0010468
Vvi1g0297 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 214 IPR013087 -
Vvi1g0297 275 Gene3D Classic Zinc Finger 190 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0297 Vvi-Chr1 2770673 2771827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0297 23 250 C2H2 Transcription Factor Family AT1G13290 77.253 2.02e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0297 zf-C2H2_6 0.00013 CL0361