LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0294	ATGTATACCTCTTTCTCATCTTCAGAACAACGCTCCTCTCTTTTGCTTGTGTCTCTGAACATGGACGGAAGTTGCATAGATGAGAGTACTACTAGTGATTCTATTTCAACGTCGCTGCCCGCTTTATCTGCTCTGCCGGCAACCAAGTCGCCGGAGAGTTTGTGCAGAGTTGGGAGTGGGACGAGTGTGATACTGGACTCCGAGAGCAGTATCGAGGCTGAGTCTAGGAAGCTTCCCTCCTCCCGATTCAAGGGAGTGGTGCCTCAGCCCAACGGACGGTGGGGTGCCCAGATTTATGAGAAGCACCAGAGGGTGTGGCTGGGAACGTTCAATGAAGAGGAAGAAGCTGCCAAGGCTTACGACATCGCGGCGCAGAGGTTCCGTGGCCGCGACGCGGTTACTAACTTCAAACCATTGTCGGAGACGGAGGAGGACGATATCGAAGCCGCGTTCTTGAATTCTCATTCCAAGGCGGAGATCGTGGACATGCTGAGGAAACACACGTACAATGATGAGCTGGAGCAAAGCAAGCGAAACTACGGGTTGGACGCGAATGGGAAGAGGAGCCGAGCCGAAGGCCTCATGACTCCATTCGGGTCAGACCGGGTCACCAAATCCCGGGAGCAGCTCTTCGAGAAGACGGTGACGCCCAGCGACGTGGGTAAGCTAAACCGGCTGGTGATACCCAAACAACACGCGGAAAAGCACTTCCCCTTGCAGACTGGAACCACATCCAAAGGGGTGCTTCTGAATTTCGAAGACATGGGCGGGAAAGTATGGAGGTTTCGATACTCGTACTGGAACAGCAGCCAGAGCTACGTTCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTTAAGGCGGGAGACATTGTGAGTTTCCAGAGATCGACGGGAGGGGACAAGCAGCTGTACATAGACTGGAAGGCCAGAAACGGCCCGACGAATCAGATCAATCCGGTAGAGCCGGTGGAGATGGTGAGGTTATTCGGAGTCAACATTTTCAAAGTACCCGTAAATAGCAGTGTGGTTGTGGCTAACAATGGTAGTTGGACTGGTAAGAGAATGATAGAAATGGAGCTCCTGTCCTTCGAATGTAGTAAAAAACAGAGGGTAATCGGAGCTGTGTAA	1137	0.5259	MYTSFSSSEQRSSLLLVSLNMDGSCIDESTTSDSISTSLPALSALPATKSPESLCRVGSGTSVILDSESSIEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKPLSETEEDDIEAAFLNSHSKAEIVDMLRKHTYNDELEQSKRNYGLDANGKRSRAEGLMTPFGSDRVTKSREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQTGTTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYIDWKARNGPTNQINPVEPVEMVRLFGVNIFKVPVNSSVVVANNGSWTGKRMIEMELLSFECSKKQRVIGAV*	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0294	378	Gene3D	AP2/ERF domain	81	138	IPR036955	GO:0003700\|GO:0006355
	Vvi1g0294	378	CDD	B3_DNA	210	299	IPR003340	GO:0003677
	Vvi1g0294	378	Gene3D	-	199	321	IPR015300	-
	Vvi1g0294	378	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	77	347	IPR044800	GO:0003700
	Vvi1g0294	378	CDD	AP2	81	136	IPR001471	GO:0003700\|GO:0006355
	Vvi1g0294	378	FunFam	AP2 domain-containing protein RAP2.8	81	138	-	-
	Vvi1g0294	378	Pfam	AP2 domain	82	129	IPR001471	GO:0003700\|GO:0006355
	Vvi1g0294	378	SMART	B3_2	211	314	IPR003340	GO:0003677
	Vvi1g0294	378	Pfam	B3 DNA binding domain	211	311	IPR003340	GO:0003677
	Vvi1g0294	378	ProSiteProfiles	B3 DNA-binding domain profile.	211	314	IPR003340	GO:0003677
	Vvi1g0294	378	ProSiteProfiles	AP2/ERF domain profile.	82	137	IPR001471	GO:0003700\|GO:0006355
	Vvi1g0294	378	SMART	rav1_2	82	143	IPR001471	GO:0003700\|GO:0006355
	Vvi1g0294	378	SUPERFAMILY	DNA-binding domain	81	137	IPR016177	GO:0003677
	Vvi1g0294	378	SUPERFAMILY	DNA-binding pseudobarrel domain	207	312	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0294	Vvi-Chr1	2751583	2752719	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0294	21	375	B3 DNA Binding Superfamily	AT1G25560	63.130	1.20e-153	436

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-RAV	Vvi1g0294		B3	1.5e-29	CL0405