Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0293 ATGTTGGCTTTCGCGGTCTTCTTCTTCATTCTCCCAATCCTCTTCTCGCCATTGTCATCCTCTGAAGTTCAATATCCATTCAATGTTTCTTACAACATTGACTGCGGCGGCTCCACCAATTCCGTCGACCAGTTTAACAGGACTTGGCTCTCCGACCGCAACTACACCGGTGGTTCCACCGGCCTGGTTTCCGAGCCTCTCCACTTCCATCCGCTCCAAGAGAAGACCATCCGATTCTTCCCTCTCTCGTCAGGGAAGAAGAATTGTTATATAGTCAATCTCCCGAATGGACGGTACTACGTGCGCACGTTTACGGTGTACGACAACTATGACGGGAAGTCGCATTCTCCGAGCTTTGACTTGTCAGTGGAGGGAACCCTAGTATTCAGCTGGCGGTCGCCGTGGCCGGAGGAGGTCAGCCAACACGGGGCCTACTCCGATCTTTTCGTATACGTCAACGACGGCGAGGCCGACGTCTGTTTCTACAGCATTGCAACCGATCCTCCGGTAATCGGCTCGCTCGAAATCATCCAGATCGATGCGTACTCTTACGATTCTGCCACAATTGGTACCGATCAGATTCTGGTTAATTATGGACGGTTAACTTGCGGCTCGGACCAATGGGGGCCGGGGTTCAGCAACGATACCGATTTCTTTGGCCGGTCCTGGCAGTCCGATGAAGAATTTCGAGCAAAGAATTCAAATATTAAGCGTTTATTGACTTCGAAAAGTATAGCTAATACGAATAAATTACCTAATTATTTTCCGATGCGATTGTATCAGTCGGCCGTTACGGTTACGGGAAATGGGGCATTAGAGTATGAATTGCAGGTTGATGCGAAATTGGATTACTTGTTGTGGTTTCATTTTGCGGAGATTGATGCGAGTGTAAATGCGGCTGGGAAGAGGGTTTTCGAAGTGGTGATAAATGGGAATAATGTGACTAGGATTGATGTTTATCAGCGGGTTGGGGGTTTTGCTGCAGATAATTGGCATTATGTTGTGAAGAATTTGAGTAATACTCTATTGACTGTGAAGCTTGTGCCTGTTGTTGGTGCTCCTATACTTAGTGGGCTTGAGAATTATGCTCTGATTCCGGCGGATCTTTCAACGGTGCCTGATCAAGTGATTGCTATGAGAGCATTGAAAGAATCTCTTCGTATTCCGGCTAGAATGGGTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGTGTTACTTGCCATCCCAACAAGAAAGAAACTGCCCTTGTGGTATCTCAAATAGATCTGGGAAGTCAAGGCTTGAAGGGTTTTATTAGTGATCAAATTGGACATTTGTCAAATTTAGTAAGCTTAAACCTGAGTTCCAATTTTTTGGAAGGTACTCTACCATCTGGGCTTGGTCAAGAGTCTCTTGCAAGATTGGATTTGTCAAATAATCAGTTAACTGGGTCCATACCAGAAAGTCTAGCTTCTTCAAATCTGCAGCTTGTGCTATTGAATGATAATTTATTGGAAGGGAAGGTACCAGACAAAATTTTTTCAGTCGGTGTACATGGTGGATCTATTGATCTCTCTGGTAACAAAGGCTTGTGTGGTGTTTCACCTCTGCCATCATGTCCTTTGTTCTGGGACCATGGCAGCTTATCCACTGGTGGTAAAATTGGAATCGGCATAGCATGTTCGGTTATCTTTTGTGTGCTTCTATTGGTGATATACATATTCTGCATCAGGAGAGGGAATGATGATTATGACTTTGGTCTACCCCAAGATTTAATGTCACTAGCTGCAAAGAGAAACAAGTATCAGAGACAGAAGTCCTTAATGCTCCTTGAAATGGAGAGCCAACATGCAAAAGGATTCCCATCTACTTTGAATCTGCGATCAGAGTCTTCTTGA 1893 0.4517 MLAFAVFFFILPILFSPLSSSEVQYPFNVSYNIDCGGSTNSVDQFNRTWLSDRNYTGGSTGLVSEPLHFHPLQEKTIRFFPLSSGKKNCYIVNLPNGRYYVRTFTVYDNYDGKSHSPSFDLSVEGTLVFSWRSPWPEEVSQHGAYSDLFVYVNDGEADVCFYSIATDPPVIGSLEIIQIDAYSYDSATIGTDQILVNYGRLTCGSDQWGPGFSNDTDFFGRSWQSDEEFRAKNSNIKRLLTSKSIANTNKLPNYFPMRLYQSAVTVTGNGALEYELQVDAKLDYLLWFHFAEIDASVNAAGKRVFEVVINGNNVTRIDVYQRVGGFAADNWHYVVKNLSNTLLTVKLVPVVGAPILSGLENYALIPADLSTVPDQVIAMRALKESLRIPARMGWNGDPCAPTNWDAWEGVTCHPNKKETALVVSQIDLGSQGLKGFISDQIGHLSNLVSLNLSSNFLEGTLPSGLGQESLARLDLSNNQLTGSIPESLASSNLQLVLLNDNLLEGKVPDKIFSVGVHGGSIDLSGNKGLCGVSPLPSCPLFWDHGSLSTGGKIGIGIACSVIFCVLLLVIYIFCIRRGNDDYDFGLPQDLMSLAAKRNKYQRQKSLMLLEMESQHAKGFPSTLNLRSESS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0293 630 ProSiteProfiles Leucine-rich repeat profile. 469 491 IPR001611 GO:0005515
Vvi1g0293 630 FunFam Putative LRR receptor-like serine/threonine-protein kinase 373 539 - -
Vvi1g0293 630 Pfam Malectin-like domain 33 363 IPR024788 -
Vvi1g0293 630 Gene3D - 200 365 - -
Vvi1g0293 630 Gene3D - 27 180 - -
Vvi1g0293 630 PANTHER OS07G0107800 PROTEIN-RELATED 32 596 - -
Vvi1g0293 630 FunFam Os01g0140400 protein 27 179 - -
Vvi1g0293 630 FunFam Di-glucose binding protein with Leucine-rich repeat domain 200 362 - -
Vvi1g0293 630 SUPERFAMILY L domain-like 372 528 - -
Vvi1g0293 630 Gene3D Ribonuclease Inhibitor 376 539 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0293 Vvi-Chr1 2726787 2743295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0293 32 619 Receptor kinase-like Gene Family AT3G46400 24.386 7.41e-35 139