Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0288 ATGGCAACTATTGCAACAAGGGTAGTGGAGGGACTAGGTCTTGGCCATGCCAAGCTCCATGCTTTTAGTCCCAAACACCCGTCTCCATTTCTGGGCAAAAAGCTCAGGTCTCAGTCACTGTCACTGCCCAGTAAAAAAGCCGTCTCCAACTTGGTATGTGCGGCAGGAGGTGGATTTTTCAATCTTGTTCACGATGTTTTTTTGGGTGTTGGAGTGGGGCTGCCGTGTACAGTCATGGAGTGCGGCGATATCATATACCGGAGTACGCTACCCCGATCAAACGGTCTCACACTCACGGCTCCCGGCGCTATTTTGGCGCTGGGTGCTCTGTCTTACCTGTGGGCTACACCTGGTGTGGCTCCTGGGTTCTTTGATATGTTTGTTCTTGCTTTTGTTGAGAGATTGTTTAGGCCATCTTTTAAGAAGGAGGATTTTGTGCTGGGGAAGAAGTTGGGGGAGGGAGCTTTCGGTGTGGTTTATAGGGTTTCATTAGCAAAGAAACCAGGGGCAAAGGAAGGTGACTTAGTCTTGAAAAAGGCTACTGAATATGGTGCCGTGGAGATTTGGATGAATGAGCGTGCACGAAGGGCTTGCGCAAATAGCTGTGCCTACTTTGTCTATGGCTTTCTTGAGAGTTCTTCAAAGAAAGGAAGTGAATACTGGCTTCTATGGCGGTATGAAGGGGAGTCCACACTTACAGATCTGATGCTGAGTAAAGAGTTTCCATACAACGTGGAAAGTATGATTCTTGGAGAGGTTCCAGACTTGCCTAAGGGGCTGGAAAGGGAAAACAAAATCATTCAGACAATCATGAGGCAGCTTTTATTTGCATTGGATAGTCTTCACTCAACTGGGATTGTTCATAGAGATATTAAGCCACAAAATATTATTTTTTCTGAAGGGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGATATGCAGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCTGCACCCTCAGCTCCAGTGGCAACTGCACTTTCCCCAGTCCTATGGCAGATGAATTTGCCAGATAGATTTGACATCTACAGTGCTGGTCTCATTTTCCTACAAATGGCATTCCCATCATTGAGGACTGATAGTAGCCTCATACAATTCAACCGCCAACTCAAGAGGTGTGAATATGATTTAGTTGCATGGAGGAAGACTGTGGAGCCTCGTGCTAGCCCTGACCTGCGGAGGGGCTTTGAGTTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTAACGTCAATGGTTCGTTTCAAAGCACGACGAAGAACCAGTGCAAAAGCAGCCTTAGCTCATCCCTACTTTGATAGGGAAGGCTTATCAGTGCTGTCCCTCACACAGAAGCTAAGGCTGCAACTCTTTCGAACTACACAACAGGATTATGGGGAAGCTGCCAAATGGATTATTCGGCTAATGGCAAAATCAGGAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGAGAAATACAGCCTAAGAAGAAGGGAAATTCGCAAAGGAATGCTCTTGCTTCCGTTCTTCGGCTGCAGAGGAAGATAGTAAGAACACTGAATGAGAGCATGGATGACCTTAACCGACGCAGGAAGAGCCTTTGGTGGAGCAGGTGGATCCCCAGAGAAGAATGA 1722 0.4669 MATIATRVVEGLGLGHAKLHAFSPKHPSPFLGKKLRSQSLSLPSKKAVSNLVCAAGGGFFNLVHDVFLGVGVGLPCTVMECGDIIYRSTLPRSNGLTLTAPGAILALGALSYLWATPGVAPGFFDMFVLAFVERLFRPSFKKEDFVLGKKLGEGAFGVVYRVSLAKKPGAKEGDLVLKKATEYGAVEIWMNERARRACANSCAYFVYGFLESSSKKGSEYWLLWRYEGESTLTDLMLSKEFPYNVESMILGEVPDLPKGLERENKIIQTIMRQLLFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSAGLIFLQMAFPSLRTDSSLIQFNRQLKRCEYDLVAWRKTVEPRASPDLRRGFELLDLDGGIGWELLTSMVRFKARRRTSAKAALAHPYFDREGLSVLSLTQKLRLQLFRTTQQDYGEAAKWIIRLMAKSGTKQDGGFTEAQLQELREIQPKKKGNSQRNALASVLRLQRKIVRTLNESMDDLNRRRKSLWWSRWIPREE* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0288 573 FunFam Serine/threonine-protein kinase STN7, chloroplastic 254 468 - -
Vvi1g0288 573 CDD STKc_SNT7_plant 149 463 - -
Vvi1g0288 573 Pfam Protein kinase domain 147 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0288 573 ProSitePatterns Protein kinases ATP-binding region signature. 151 178 IPR017441 GO:0005524
Vvi1g0288 573 Gene3D Transferase(Phosphotransferase) domain 1 257 468 - -
Vvi1g0288 573 SMART serkin_6 145 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0288 573 SUPERFAMILY Protein kinase-like (PK-like) 131 465 IPR011009 -
Vvi1g0288 573 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 56 548 - -
Vvi1g0288 573 Gene3D Phosphorylase Kinase; domain 1 132 225 - -
Vvi1g0288 573 ProSiteProfiles Protein kinase domain profile. 145 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0288 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0288 Vvi-Chr1 2692329 2698874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0288 263 464 Core Cell Cycle Gene Families AT2G38620 31.455 1.17e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vvi1g0288 Pkinase 2.6e-21 CL0016