Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0286 ATGTCATGGTTGGTTGACAGTAATAGATTTGCAACAAAAATCAAGAATGCATCTGGCACTCGTGAGACTGAAAGAGTCAAATGGAAAAGCAATCCTAGTAGAGCTTGCCCAAATTGCCAGCATATAATTGACAATAGTGATGTTACTCAGGAGTGGCCAGGATTACCTAGAGGTGTGAAATTTGATCCATCTGATCAGGAGATCATATGGCATTTACTTGCAAAAGTTGGAGTTGGGAATTTGGAAGCACATCCTTTTATTGATGAGTTCATCCCAACTGTTGAGGAAGATGATGGAATCTGCTATACCCATCCTCAGAATCTGCCAGGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTTCGGTGATGTTCGTTGGCACAAAACCGGCAAGACCAAACCTGTGATTTTGGATGGGGTTCAGAGAGGGTGTAAGAAGATTATGGTTCTCTACGCAAGCATAGTCAGGGGTGGGAAACCAGAGAAAACAAATTGGGTTATGCACCAATATCACCTGGGTACTGGAGAGGATGAGAAAGATGGGGAATATGTTATTTCTAAAGTCTTTTATCAGCAGCAACAAATCAAACAGAGTGACAAAATTGAACAAGATTTTCCTGAAAGCTCTGGTGCCTTAATTGCAAAAGTAGATCCAGTTACTCCCAAATCTGCAACTCCTGAACACCCTCTTACTGAAAGAAGAAATTCTGACTTTAACCCAGGACAAGAGTCTCCTATTGCTTGCATGGATTCCTCGGTTCAGCAACCTGACATGGGGCATTTAGAAGGTGAGGTGCAAACTGAATGTGAACAGATTGATTGCCAAAATATCCTAAAGGCAGAAAATCGTGTTGATGAAGTCTTAGATCATAATGATAATCATGGTGAGGAAGAAGCAAAATGGTGGGACAATGAGTCGCAGTTTCTGTTAGATTCACAGCAACTTGTGGAAGGGTTGTCCATCTGTGATGAGTTTCTTCAGAGCCAGTCTCCCAATAGGGAAGGACATGAGAATGGGAATGATGGGCATGTGACGAGCAAACCCCGTCTCTCTGATTATGCTAACTTAGGAGCAGAGGACTTAAAGAAGGATCTGGAGGATTGCCAAGATCTGGTCCTTGATCCGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGTTGA 1293 0.4292 MSWLVDSNRFATKIKNASGTRETERVKWKSNPSRACPNCQHIIDNSDVTQEWPGLPRGVKFDPSDQEIIWHLLAKVGVGNLEAHPFIDEFIPTVEEDDGICYTHPQNLPGVKQDGSAAHFFHQAIKAYNTGTRKRRKIHGDVFGDVRWHKTGKTKPVILDGVQRGCKKIMVLYASIVRGGKPEKTNWVMHQYHLGTGEDEKDGEYVISKVFYQQQQIKQSDKIEQDFPESSGALIAKVDPVTPKSATPEHPLTERRNSDFNPGQESPIACMDSSVQQPDMGHLEGEVQTECEQIDCQNILKAENRVDEVLDHNDNHGEEEAKWWDNESQFLLDSQQLVEGLSICDEFLQSQSPNREGHENGNDGHVTSKPRLSDYANLGAEDLKKDLEDCQDLVLDPANIELDTPPDFRLSQLEFGSQDSFIAWGGEQGG* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0286 430 MobiDBLite consensus disorder prediction 233 267 - -
Vvi1g0286 430 SUPERFAMILY NAC domain 40 213 IPR036093 GO:0003677|GO:0006355
Vvi1g0286 430 MobiDBLite consensus disorder prediction 351 371 - -
Vvi1g0286 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 391 IPR044799 GO:0003700
Vvi1g0286 430 Gene3D NAC domain 64 218 IPR036093 GO:0003677|GO:0006355
Vvi1g0286 430 FunFam NAC domain-containing protein 8 64 217 - -
Vvi1g0286 430 ProSiteProfiles NAC domain profile. 55 213 IPR003441 GO:0003677|GO:0006355
Vvi1g0286 430 Pfam No apical meristem (NAM) protein 56 194 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0286 Vvi-Chr1 2678902 2684666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0286 31 215 NAC Transcription Factor Family AT1G28470 58.639 1.09e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi1g0286 NAM 5.1e-21 No_clan