Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0279 ATGTTTCCTTCCAGCAACCGTTCTAACCCTTTCCGCTACATCGATGATGAAAACCCTAACTCAGGAGAGGACCAACCACCCTCATCCTTCCTACACTTCCCTGCCGCGTTTCTTGATGACTATGAACTCATTCCAACTCACTTATTACCACAACGACAACTCATGTTAGTAGACAGATCAGGTGCCCAAGGTGATCAGAGTGAGATTAACGCGGCAGCTTCAAACAAGACAACAAGTGTGGACAAGGAGACAAGTAGCGATGTTGTAGCTGATCAGCAGCAGGAGCCTTTGGAAGTCCCGCCGATGAAGAAGAGCGATAGTGCGAAGAAGTCTGTCCCCAGAAAGAGAACTGGGAAGAAGGACCGGCACAGCAAGATCTATACAGCACAAGGTCCAAGAGACCGGAGAATGAGATTGTCCCTCCAAATTGCCCGTAAGTTCTTTGATCTCCAGGACATATTGGGCTTTGATAAGGCAAGCAAAACCATAGAATGGCTCTTCACCAAGTCCAAAGCAGCAATCAAGGAACTCACCGGAAATCTTCCACAAATAAAGCACATTGGTGGTGGTGGCACTAGTGGTGGAACGAGTGCATCCTCTATTTCCGAAAGCAAAGGAACATCGAGATTGAAGGAGATCGCCCACAATGGAGAGCCCAAGGGCATTGTGACAAATGGTGAATCTTCAGTACTGACAACTCCTAAAGAGAAAAAGAACAGAAAACCTCGTAGTAAATCAGCACTTAATCCTCTTGCAAAGGAATCTCGCGAGAAAGCAAGGGCAAGGGCAAGGGAAAGAACAAGAGAAAAAATGATTATGAGAAGTCTTGAAAAGTCGAAACAATGTTCTGAAGCAAACCCTAATAATTTGGAACAGTTAGTCCCTTCCAGTCCACTCGAAACTGGTGAAGCATCGGGTTCTCGCAGCCAAGAAATGAGTGCTTCCCTCGAAGTGGTGGCTGAAGTAGAAGAACCCAGCACCCACTCGCTGGAACATCAAATGGCTACTGTGGGCATCATTGAGAAATTTTTGGGCATTCCAAGCTCTTCAACATCATCTTCCATTTTCAATTATTCCCCCAACATTGCAGTATCAAGTGGGGTAAACTCCAACAATTTTCCATGTTTTCCTGGAAATTGGGACATAGACGATAGTAGAATTCATTCCGGTTACTCTGCAATGACAAACATGGGTCCATCCACAGGTAACTTTCAGGATCAAAACCCTACTTCAGTTTTCATGACCACCACAAATGTCCGACAACAAAACCCTACTTCTCTATTCATGACCACTTCAAATCGTCGACTGGAGTCTCAATGTTATTTTGTGTTAATGTCATCCTTGCTTGTTCCATGTCTTAAATATTATCCTTTTGTTTTTGGTCGTACCAATTACGATCTCATTTTTACTATTATATTAATTATCATCTGTGCTTTCTTTCAGTTCCATATCTTTCACTCACTCTCACAACAGATATAG 1479 0.4368 MFPSSNRSNPFRYIDDENPNSGEDQPPSSFLHFPAAFLDDYELIPTHLLPQRQLMLVDRSGAQGDQSEINAAASNKTTSVDKETSSDVVADQQQEPLEVPPMKKSDSAKKSVPRKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDILGFDKASKTIEWLFTKSKAAIKELTGNLPQIKHIGGGGTSGGTSASSISESKGTSRLKEIAHNGEPKGIVTNGESSVLTTPKEKKNRKPRSKSALNPLAKESREKARARARERTREKMIMRSLEKSKQCSEANPNNLEQLVPSSPLETGEASGSRSQEMSASLEVVAEVEEPSTHSLEHQMATVGIIEKFLGIPSSSTSSSIFNYSPNIAVSSGVNSNNFPCFPGNWDIDDSRIHSGYSAMTNMGPSTGNFQDQNPTSVFMTTTNVRQQNPTSLFMTTSNRRLESQCYFVLMSSLLVPCLKYYPFVFGRTNYDLIFTIILIIICAFFQFHIFHSLSQQI* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0279 492 Pfam TCP family transcription factor 117 273 IPR017887 -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 279 308 - -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 69 133 - -
Vvi1g0279 492 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 65 408 IPR005333 GO:0003700
Vvi1g0279 492 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 1 27 - -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 184 308 - -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 190 207 - -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 69 92 - -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g0279 492 MobiDBLite consensus disorder prediction 250 277 - -
Vvi1g0279 492 ProSiteProfiles R domain profile. 253 270 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0279 Vvi-Chr1 2574244 2575900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0279 107 365 TCP Transcription Factor Family AT1G68800 43.678 3.33e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi1g0279 TCP 2.5e-47 No_clan