Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0269 ATGGCGGTGGAAGCTTCGAGATCGAGCTCGTCGGCCGATTCCTACATCGGGAGCTTGATTAGTTTGACATCCAAAAGCGAGATCAGGTACGAGGGCGTTCTCTACAACATCAACACCGAGGAGTCCAGCATCGGATTGCGAAACGTAAGGTCATTCGGTACAGAAGGACGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGTGACAAAGTTTATGAATACATCCTATTTCGTGGAAGTGACATCAAGGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGGCCTTTGCCAGATCTTAGTTCCCACAATGCACAGTTGGGACTTCCTGGGTCAACTTTTCAAGGTGGTCTGCCTCTATATCAACCTGGAGGGAATTTAGGATCCTGGGGCCCTGCACCGCCTCCCCCTACCGCAAATGGCAGTGGCCTTACCATGCCTATGTATTGGCAAGGATACTATGGTCCCCCAAATGGGCTTCCTCATTTACACCAACAATCTTTGCTTCGGCCCCCACCTGTTCTGTCAATGCCTCCAATGCAATATCCTGGTTTCAATGCCTCTTTACAGCCAGGAGCTCCAAATTTGCCTGGTTCGAATCTACCGGAATATTCTTCTCCTTTGCTTCCAACCAGTAGTGGTTCCCTTAATTTAACCTCTACTTCTTTATCACCATCTACTCTGCCTTCAAATCTGCCTTCAAGTATGCCTTCAATTCTACCTTCAAGCATGCCTTCAATTCTGCCCTCAACTCTGCCTTCTGCATTGCCTCCTGTACCATCTGCTGCTTTAGCTTCTGAAACCTTATCCAGTTTGATGCCAAATAAGGTTCCTAATCCTACTCTTCCTTCAGTAACACTAGGTATTAGCTTGCCATTAGTCACTCCTTTGAATACATCCAGTTCGGAGATAAATGCTATTGCACCACCAATTTCTAACAAGCCTAATGCAGTTTCTGGTCCAACATTGCCTTATCAAACCATATCTCAGTCCATTCCCTCTGTTGGGACATCTAGTCCAAATCATCCAGAAATAGCAGCACCTTCACTGGTAACCCCAGGTCAGTTGTTGCAGTCTGGACCAACCACAATTTCTTCATCTCCGTCTTCACAAACAGCTCACAAGGATGTGGAGGTGGTTCAGGTATCATCATCAGCCTCACAAGAATCATCAGTTCCGGTGTCAGCAGAAGCTCAACCACCGATATTACCTCTACCAGTACCTTCTCGAACTGTTCAAAAGTTGAATGGTGCTCCTTTCCAAGGTCGTCATGGTTACCGGGGACGTGGAAGAGGAACAGGGGGCTCACGTCCAGTGACAAAATTCACTGAGGATTTTGATTTCATGGCAATGAATGAGAAATTCAAGAAGGATGAAGTATGGGGTCATCTTGGTAAAGGTAATAAATCTCAGTCAAGGGACAAAGAAGTTGATGGAAAAGTCAGCGATGAAGATGATTACGAAGATGAAGATGATGCTGAATTACCAAAGTTTGAGGTCAAGCCCATCTATAATAAGGATGACTTCTTTGATTCCCTCTCTTGTAATGCCCTTGACCATGATTCACATAATGGAAGGACTAGGTTCTCCGAACAAATGAAGATTGATACTGAGACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCCAATCGTGGAGGGCGTGGTCGGGGTCCTTATTATGGAAGGGGTTATGGCTATGTTGGGAGGGGCCGTGGACGGGCTATGCCCAGTCGTGGTCCCTAA 1851 0.4684 MAVEASRSSSSADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVYEYILFRGSDIKDLQVKSSPPVQATPPINNDPAIIQSHYPRPATTSASLPSTVSGPLPDLSSHNAQLGLPGSTFQGGLPLYQPGGNLGSWGPAPPPPTANGSGLTMPMYWQGYYGPPNGLPHLHQQSLLRPPPVLSMPPMQYPGFNASLQPGAPNLPGSNLPEYSSPLLPTSSGSLNLTSTSLSPSTLPSNLPSSMPSILPSSMPSILPSTLPSALPPVPSAALASETLSSLMPNKVPNPTLPSVTLGISLPLVTPLNTSSSEINAIAPPISNKPNAVSGPTLPYQTISQSIPSVGTSSPNHPEIAAPSLVTPGQLLQSGPTTISSSPSSQTAHKDVEVVQVSSSASQESSVPVSAEAQPPILPLPVPSRTVQKLNGAPFQGRHGYRGRGRGTGGSRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKGNKSQSRDKEVDGKVSDEDDYEDEDDAELPKFEVKPIYNKDDFFDSLSCNALDHDSHNGRTRFSEQMKIDTETFGDFPRHRGGRGGRGPNRGGRGRGPYYGRGYGYVGRGRGRAMPSRGP* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0269 616 MobiDBLite consensus disorder prediction 493 510 - -
Vvi1g0269 616 PANTHER SCD6 PROTEIN-RELATED 10 610 - -
Vvi1g0269 616 Gene3D - 5 91 - -
Vvi1g0269 616 ProSiteProfiles DFDF domain profile. 464 500 IPR025762 -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 86 102 - -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 493 523 - -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 85 150 - -
Vvi1g0269 616 CDD LSm14_N 15 86 IPR025609 -
Vvi1g0269 616 ProSiteProfiles Sm domain profile. 7 90 IPR047575 GO:0003723
Vvi1g0269 616 ProSiteProfiles TFG box profile. 554 574 IPR025768 -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 109 141 - -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 564 616 - -
Vvi1g0269 616 SUPERFAMILY Sm-like ribonucleoproteins 14 91 IPR010920 -
Vvi1g0269 616 ProSiteProfiles FFD box profile. 532 547 IPR025761 -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 216 262 - -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 383 425 - -
Vvi1g0269 616 FunFam Trailer hitch, isoform C 9 91 - -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 564 579 - -
Vvi1g0269 616 Pfam Scd6-like Sm domain 15 88 IPR025609 -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 383 469 - -
Vvi1g0269 616 MobiDBLite consensus disorder prediction 222 262 - -
Vvi1g0269 616 SMART LSM14_2 9 109 IPR025609 -
Vvi1g0269 616 SMART FDF_2 470 574 IPR019050 -
Vvi1g0269 616 Pfam FDF domain 471 571 IPR019050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0269 Vvi-Chr1 2508304 2516714 Dispersed