Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0267 ATGAAGCCTTTCACCGCCATTTTTCACACCACTTTAGTTCTCTTCATCCTCTGTTTGGGAGTGTATTGTGATGGTGATGGAGACACAGAAATGGCTCCTATGGTGGCTCCTATGGAGAAAACAGAGCAAGAAGCCCTGTACTCTACTATTCAGGGGTTCGTGGGTACGTGGTGGAATGGCTCAGATCTCTACCCAGACCCGTGCGGGTGGACTCCTATACAGGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAATTTAAACTGCATTTGTTCGAGCTTAAGCACCTGAAAACCCTGTCCTTCTTGAATTGCTTCATCTCACCCCGGAAACATCCTGTGACCATTCCTGCAAATATTTGGTATAAACTTGCTGGCAGCTTAGAATCACTAGAGTTCAGGTCCAATCCGGGTCTTGTTGGGCAAGTCCCTACTGGTTTTGGAGACCTTAGGAAGCTCCAATCTTTAGTGCTATTAGAAAATGGATTAAGTGGAAATTTACCAACAATTATTGGGAACTTAGTCAGCTTGAGGCGGCTAGTCATTGCTGGAAACCGGTTTACAGGTCATATCCCTGATAATTTTGGTGGATTGGGTGAACTTTTAATCTTAGATTTAAGCAGGAATTCTCTTTCTGGGCCTTTACCCACGAGTTTTGGAGGTTTGAGTTCACTCTTGAAGCTTGATTTGAGTAACAACCAATTGGAGGGGGATCTGCCTAGTGAACTTGGAAATATGAAGAATTTAACTCTGTTGGACCTCAGAAACAACAAATTTTCAGGTGGGTTGACGCAGTCACTTCAAGAGATGGCTTCCTTAGAAGATATGGCCCTATCCAACAACCCAATAGGGGGAGACCTCTTGAGCTTAGAATGGCAAAATCTACAGAACTTGGTCATTTTGGATCTCTCCAACACGGGTTTGACAGGAGAGGTTCCAGAGTCACTGGCAGAATTGAAGGGTCTGAGGTTTCTGGGTCTTAATGACAACAATCTCACGGGCAATCCCTCACCAAAGCTTGCAGCTCTGCCTAGTGTTACCGCGCTCTACCTAAATGGAAACAATCTGACAGGGGAGCTTAAATTCTCTGGATGGTTTTATGGGAAAATGGAGAGGCGATTTGGGGCCTGGAACAACCCAAATCTTTGTTACCCAGTTGAGTTAATGTCATCAAGTCATGTTCCTTTTGGAGTAAAGCCATGCGACCAGGAGGTCACATATCTTGAACCTGATACAAGGACCAAGTTGGGTAATGAGAATGGGAATGCGGATCAGAATTTCCATTTCATGGCCTCTTTGGGATTCTCAAGCCATGCTATTGATGGGCTTTGGTGGGTTTTTCTGGCTGAGATATCAACCATGATTCTACTCTGGAATTTTTTCTCATAG 1452 0.4442 MKPFTAIFHTTLVLFILCLGVYCDGDGDTEMAPMVAPMEKTEQEALYSTIQGFVGTWWNGSDLYPDPCGWTPIQGVSCDLYDGFWYVTALNIGPVQDNSLDCAHNVEFKLHLFELKHLKTLSFLNCFISPRKHPVTIPANIWYKLAGSLESLEFRSNPGLVGQVPTGFGDLRKLQSLVLLENGLSGNLPTIIGNLVSLRRLVIAGNRFTGHIPDNFGGLGELLILDLSRNSLSGPLPTSFGGLSSLLKLDLSNNQLEGDLPSELGNMKNLTLLDLRNNKFSGGLTQSLQEMASLEDMALSNNPIGGDLLSLEWQNLQNLVILDLSNTGLTGEVPESLAELKGLRFLGLNDNNLTGNPSPKLAALPSVTALYLNGNNLTGELKFSGWFYGKMERRFGAWNNPNLCYPVELMSSSHVPFGVKPCDQEVTYLEPDTRTKLGNENGNADQNFHFMASLGFSSHAIDGLWWVFLAEISTMILLWNFFS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0267 483 Gene3D Ribonuclease Inhibitor 311 414 IPR032675 -
Vvi1g0267 483 SMART LRR_typ_2 219 242 IPR003591 -
Vvi1g0267 483 SMART LRR_typ_2 316 340 IPR003591 -
Vvi1g0267 483 SMART LRR_typ_2 243 267 IPR003591 -
Vvi1g0267 483 SMART LRR_typ_2 364 389 IPR003591 -
Vvi1g0267 483 SMART LRR_typ_2 195 218 IPR003591 -
Vvi1g0267 483 FunFam Piriformospora indica-insensitive protein 2 41 212 - -
Vvi1g0267 483 Gene3D Ribonuclease Inhibitor 213 310 IPR032675 -
Vvi1g0267 483 PRINTS Leucine-rich repeat signature 222 235 - -
Vvi1g0267 483 PRINTS Leucine-rich repeat signature 243 256 - -
Vvi1g0267 483 FunFam Piriformospora indica-insensitive protein 2 213 310 - -
Vvi1g0267 483 Gene3D Ribonuclease Inhibitor 40 212 IPR032675 -
Vvi1g0267 483 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Vvi1g0267 483 SUPERFAMILY L domain-like 48 382 - -
Vvi1g0267 483 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 292 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0267 Vvi-Chr1 2489476 2491767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0267 148 422 Receptor kinase-like Gene Family AT4G08850 30.182 6.35e-23 100