Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0262 ATGACGGACACCACAGATGATATTGCTGAGGAAATCTCTTTTCAGAGCTTTGATGACGATTGTAGGTTGCTGGGTAGTCTTCTCAACGAGGTGTTGCAGAGGGAAGTGGGAAGCAATTTCATGGAAAAAGTTGAAAGGAATCGGATCCTTGCTCAGAGTGCATGCAATATGAGGGCGTCAGGGATCGAGGACACTGCTGAGCTGCTTGAGAAGCAGCTCATATCGGAGATATCCCAAATGAATTTGGAGGAAGCGTTAACCCTCGCTCGAGCATTCAGCCATTATCTTAATCTGATGGGTATCGCCGAAACTCACCATAGATTACGTAAGGCACGAAATGTGGCACATATGTCAAAATCTTGTGATGACATTTTTAATCAGCTGTTGCAGGGTGGAGTTTCTCCTGAGGAGCTTTATAATACTGTTTGCAAGCAGGAGGTTGAGATCGTTCTTACTGCACATCCCACACAGATCAACAGACGTACTTTACAATACAAACACATCAGAATTGCCCATCTTTTAGACTATAATGACCGACCTAATCTTGGTCATGAGGACCGGGAAATGCTGATTGAAGATCTGGTGAGAGAGATAACTTCCATATGGCAGACAGATGAGCTTAGGCGCCAGAAACCTACTGTTGTTGATGAAGCTAGGGCTGGATTGAACATTGTGGAGCAGTCTCTTTGGAGAGCTGTACCTCATTATTTACGCCGTGTTAGCAATGCTCTAAAGAAGCACACTGGGAAGTCGCTTCCATTGACTTGCACACCAATAAAATTTGGATCTTGGATGGGAGGTGATAGAGATGGAAATCCAAATGTAACTGCAGAGGTCACCCGAGACGTATCTCTTTTATCTAGGTGGATGGCTATTGATCTCTACATCCGGGAAGTTGATAGCCTCAGATTTGAACTTTCCATGAACCGTTGCAGTGATAGCTTGTCCAGATTGGCACATGAAATTTTAGAAAAAGAAACTTCATCAGTTGATCGGAATGAGAGTCGGAACCAACCACTGAACAGGAGCCAACTGAAACCTTACAGTCAGCTAGGTCCTACCCTTCCAAGACAACTTCCTGCAGGAGCTGACCTACCCTCTTGCACAGAATGCAAGGATGGGGAATCTAAGTATCCCAAATTAGAATTTCCTGGAACTGATTACATGCCATTGAATCGTCAGGATGTTAAGGCTGCTTCAAGTTCAGATACTTCATTCCAGGATTCCAATAAGGACTTTGGCAAAACATATGGAAATGGAACTGTAGCTAATTCTAGCAATTCTCAGTCAGCTGCGACACCCCGAACTGTTTCTTTCAGCTCTGGTCAACTCCTTTCTCAGAGGAAACTATTTTCAGAATCTCAGTTGGGAAGGTCCAGCTTCCAGAAGCTTCTGGAGCCAAGCCTACCTCAACGTCCTGGAATTGCTCCTTATAGGATTGTTCTTGGAAATGTAAAAGACAAGCTTATGAAAACACAAAGACGGTTGGAGCTTCTTCTTGAGGATCTTCCTTGCGAACATGATCCTGGGGATTACTATGAAACAGCAGACGAACTCTTGGAACCACTACTGCTGTGCCATGAATCTATGCAATCATGTGGATCTGGTATCCTAGCTGATGGTCGGCTTGCTGATCTCATCCGAAGAGTTGCTACCTTTAGAATGGTATTAATGAAGCTTGACTTGCGCCAGGAATCTGCTAGGCATGCTGAAACACTAGATGCAATTACAAGTTACCTGGATATGGGTATATATAGTGAGTGGGATGAAGAAAGAAAACTGGATTTTCTGACAAGAGAGCTGAAAGGGAAGAGGCCTCTGGTTCCTCCAACTATAGAAGTTGTTGCTGATGTTAAAGAAGTGTTGGATACCTTCCGAGTTGCTGCTGAGATAGGGAGTGATTCATTTGGAGCATATGTGATTTCTATGGCCTCCAATGCAAGCGATGTCCTTGCTGTGGAGCTTCTGCAAAAAGATGCCCGACTTGCTGTTTGTGGGGAGCTGGGCAGACCATGTTCTGGTGGAACGCTACGGGTGGTTCCTCTATTTGAAACTGTGAAGGACTTGAGGGGAGCTGGGGCAGTGATCAGGAAATTGTTATCAATAGATTGGTACCGGGAGCATATTATAAAGAACCATAATGGGCACCAGGAGGTGATGGTTGGATACTCTGACTCTGGTAAAGATGCTGGGCGCTTCACTGCTGCTTGGGAACTTTACAAAGCACAAGAGGATGTTGTAGCTGCATGCAATGAGTATGGGATTAAAGTTACTCTCTTCCATGGGCGTGGAGGGAGTATAGGTCGTGGTGGTGGCCCTACATATCTTGCCATTCAATCCCAACCACCTGGTTCTGTAATGGGTACTCTCCGGTCAACTGAGCAAGGAGAGATGGTTCAAGCTAAGTTTGGGTTACCACACACGGCTGTGCGGCAACTAGAAATATACACGACTGCTGTGCTGCTTGCAACCATGCGGCCTCCACTTCCACCTAGGGAGGAAAAATGGCGGAATCTAATGGAGGAGATCTCGAAAATCAGTGGCCAATGTTATAGGAGTACAGTTTATGAAAACCCAGAATTCCTAGCCTACTTCCATGAAGCTACACCACAGGCTGAGCTTGGTTTCCTTAACATAGGAAGCCGACCCACAAGAAGAAAGAGCTCAACAGGAATTGGACATCTTCGTGCAATTCCATGGGTATTTGCATGGACTCAAACCAGATTTGTCCTTCCTGCCTGGCTTGGAGTTGGGTCAGGTTTAAAGGGTGTTTGTGAGAAGGGGCATAAAGAAGACCTAATCGCAATGTATAAAGAATGGCCTTTCTTCCAATCTACCATTGACCTTATAGAGATGGTCTTAGGGAAAGCGGATATTACCATAGCCAAGCATTATGATGAAGTTCTTGTGTCACCAAGTAGGCAAGAGCTTGGTGCTGACCTAAGGAGGGAGCTCTTGACAACAGGGAAGTTTGTCTTGGTGGTTACTGGGCATGATAAACTCTCTCAGAATAATCGAAGCTTGAGGAGACTGATTGAGAGCCGGCTTCCTTTTCTCAATCCAATGAACATGTTGCAGGTTGAGATACTGAGGAGGTTGAGACGTGACGATGATAACAATAAACTCAGAGATGCCTTGCTTATCACAATAAATGGGATTGCTGCGGGGATGAGGAACACAGGTTGA 3186 0.4523 MTDTTDDIAEEISFQSFDDDCRLLGSLLNEVLQREVGSNFMEKVERNRILAQSACNMRASGIEDTAELLEKQLISEISQMNLEEALTLARAFSHYLNLMGIAETHHRLRKARNVAHMSKSCDDIFNQLLQGGVSPEELYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPNLGHEDREMLIEDLVREITSIWQTDELRRQKPTVVDEARAGLNIVEQSLWRAVPHYLRRVSNALKKHTGKSLPLTCTPIKFGSWMGGDRDGNPNVTAEVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDSLSRLAHEILEKETSSVDRNESRNQPLNRSQLKPYSQLGPTLPRQLPAGADLPSCTECKDGESKYPKLEFPGTDYMPLNRQDVKAASSSDTSFQDSNKDFGKTYGNGTVANSSNSQSAATPRTVSFSSGQLLSQRKLFSESQLGRSSFQKLLEPSLPQRPGIAPYRIVLGNVKDKLMKTQRRLELLLEDLPCEHDPGDYYETADELLEPLLLCHESMQSCGSGILADGRLADLIRRVATFRMVLMKLDLRQESARHAETLDAITSYLDMGIYSEWDEERKLDFLTRELKGKRPLVPPTIEVVADVKEVLDTFRVAAEIGSDSFGAYVISMASNASDVLAVELLQKDARLAVCGELGRPCSGGTLRVVPLFETVKDLRGAGAVIRKLLSIDWYREHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPHTAVRQLEIYTTAVLLATMRPPLPPREEKWRNLMEEISKISGQCYRSTVYENPEFLAYFHEATPQAELGFLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGVGSGLKGVCEKGHKEDLIAMYKEWPFFQSTIDLIEMVLGKADITIAKHYDEVLVSPSRQELGADLRRELLTTGKFVLVVTGHDKLSQNNRSLRRLIESRLPFLNPMNMLQVEILRRLRRDDDNNKLRDALLITINGIAAGMRNTG* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0262 1061 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 Pfam Phosphoenolpyruvate carboxylase 19 338 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 Pfam Phosphoenolpyruvate carboxylase 468 1061 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 MobiDBLite consensus disorder prediction 326 371 - -
Vvi1g0262 1061 Coils Coil 482 502 - -
Vvi1g0262 1061 Gene3D Phosphoenolpyruvate/pyruvate domain 426 555 - -
Vvi1g0262 1061 Gene3D Phosphoenolpyruvate/pyruvate domain 289 360 - -
Vvi1g0262 1061 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1061 IPR022805 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 1061 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vvi1g0262 1061 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Vvi1g0262 1061 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 719 731 IPR033129 -
Vvi1g0262 1061 MobiDBLite consensus disorder prediction 333 351 - -
Vvi1g0262 1061 FunFam Phosphoenolpyruvate carboxylase 4 435 555 - -
Vvi1g0262 1061 MobiDBLite consensus disorder prediction 397 435 - -
Vvi1g0262 1061 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 1061 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0262 Vvi-Chr1 2445655 2456141 Dispersed/Transposed