Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0261 ATGATGCCACCTGAGCAGGAGACCAGGATCACCGGTGACCCAGCTAATGTTCTGGGGGCGAACCGGATCGAGAATGTCACAATTCATGCTGCAGAGCCAGCGAGTAATGTGAGCCCGTGTTTAGAGGATCAAACACCTGACGGACAGCAAACAACCAGACCTCAATTTTCGATTCTACGTGAATCATTACGTCCTGTGACACTCAAGTTTGAGGATGTGGTTTATGTTATCAAGTTGAGAAGCACCGAAGGCAGCTGCTTTGGGTCACCTGAGCCCAAGCAAAGTCGCACTGTGCTCAATGGGGTGAGCGGAATAGCTCGACCAGGTGAACTGCTGGCAATGTTGGGTCCATCAGGCAGTGGAAAAACCACTCTCCTCACGGCTCTGGCTGGCCGATTACCGGGGAAAGTCTCAGGTAACATAACCTATAACGGGCAGCCATTTTCAAGCTCCATGAAGCGGAAGACGGGGTTTGTCACACAAGATGATGTACTCTACCCTCACCTGACCGTCCTCGAGACCTTAACATATGCGGCCTTGTTAAGGCTCCCGAAAAAGCTCACTAGAGAGGAAAAAATCGAACAAGCTGAGCTGATCATCGTGGAGCTTGGCTTAACAAGATGCAGGAACAGTGTCATAGGGGGTCCTCTCCTCCGGGGGATATCGGGTGGTGAGCGCAAAAGGGTGAGTATTGGGCAGGAGATGCTAGTGAACCCCAGCCTATTGTTGCTGGACGAGCCCACTTCAGGGCTCGACTCAACCACCGCTCACCGCATAGTGGCCACTCTTCGGGGACTGGCACAAGGCGGGCGGACGGTGATTACAACCATTCATCAGCCTTCAAGCAGGCTGTATAGGACGTTTGATAAACTGGTGGTGCTCTCAGAAGGGTGTCCTATTTACAGTGGAAATGCTGCTAATGTTCTGGAGTACTTCGGCACAATTGGTTACCTGCCTGGATTTAGCTTATTGAACCCTGCTGATTTTCTACTTGATCTCGCTAATGGTGTAGCCCCTGATGTGAGAAAGGATGATCAACAGGACTTTCATGGTAGACCAGACCATCATGATGATCAAAATTCCATCAAACAGGCCCTGATATCATCTTACAAGAAGAGCCTATATCATATCATGAGGGCTGAGATCCATCGTAATTCTCATGGTTCAGATGGGTCTGCATCGGGACCATTGTCATCTAGAGGTTGTGAGAATCAATGGACCTCCAGCTGGTGGGAGCAATTCAAGGTGTTGCTAAGAAGGGGTTTGCAAGAGAGGAAACATGAATCTTACTCTGGTTTGAGAATTTTTCAAGTCATGTCTGTTTCAATTCTTTCGGGGCTTTTGTGGTGGCATTCTGATACTTCCCACATACAAGATCAGGTGGGACTTCTCTTTTTCTTCTCCATATTCTGGGGCTTCTTTCCTCTATTCAATGCCATATTCACATTCCCTCAGGAGCGGCCAATGCTAATAAGAGAACGCTCATCGGGCATGTACCGTCTCTCCTCATATTACTTTGCTAGAATGGCTGGTGACTTGCCTATGGAACTTGTGCTCCCAACTATCTTCGTAACCATCGCATATTGGATGGGTGGTCTCAAGCCTTCCCTGCTTACATTTGTGCTAACCCTCTTGGTCATCCTATACAATGTGCTAGTCTCTCAAGGGCTAGGACTAGCCCTTGGTGCCATTATAATGGACGTGAAACAGGGCACGGCCTTAGCTTCTGTGACCATGCTTGTGTTTCTTTTAGCAGGAGGATACTACATTCAGCACATCCCACCTTTCATTGCTTGGTTGAAGTACATCTCCTTTAGTCACTACTGTTATAAGCTTCTAGTGGGAGTGCAGTACGCAGAAAATGAGGTTTATGAGTGTGGGTTGAGGATGCATTGCAAGGTGTGGGAATTTCCTGCTATAAAGTATCTGGGTATTGATCATTGGGCTTGGGATGTGGCTGCCTTGACTGTAATGTTTGTGGGATATAGGGCTTTGGCTTATGCGGCATTGAGGATGGGGCAACATCACTGA 2031 0.483 MMPPEQETRITGDPANVLGANRIENVTIHAAEPASNVSPCLEDQTPDGQQTTRPQFSILRESLRPVTLKFEDVVYVIKLRSTEGSCFGSPEPKQSRTVLNGVSGIARPGELLAMLGPSGSGKTTLLTALAGRLPGKVSGNITYNGQPFSSSMKRKTGFVTQDDVLYPHLTVLETLTYAALLRLPKKLTREEKIEQAELIIVELGLTRCRNSVIGGPLLRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAHRIVATLRGLAQGGRTVITTIHQPSSRLYRTFDKLVVLSEGCPIYSGNAANVLEYFGTIGYLPGFSLLNPADFLLDLANGVAPDVRKDDQQDFHGRPDHHDDQNSIKQALISSYKKSLYHIMRAEIHRNSHGSDGSASGPLSSRGCENQWTSSWWEQFKVLLRRGLQERKHESYSGLRIFQVMSVSILSGLLWWHSDTSHIQDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIRERSSGMYRLSSYYFARMAGDLPMELVLPTIFVTIAYWMGGLKPSLLTFVLTLLVILYNVLVSQGLGLALGAIIMDVKQGTALASVTMLVFLLAGGYYIQHIPPFIAWLKYISFSHYCYKLLVGVQYAENEVYECGLRMHCKVWEFPAIKYLGIDHWAWDVAALTVMFVGYRALAYAALRMGQHH* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0261 676 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 666 - -
Vvi1g0261 676 SMART AAA_5 108 298 IPR003593 GO:0016887
Vvi1g0261 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 317 IPR027417 -
Vvi1g0261 676 Pfam ABC transporter 99 249 IPR003439 GO:0005524
Vvi1g0261 676 Gene3D - 86 315 IPR027417 -
Vvi1g0261 676 MobiDBLite consensus disorder prediction 38 53 - -
Vvi1g0261 676 FunFam ABC transporter G family member 22 86 315 - -
Vvi1g0261 676 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 321 IPR003439 GO:0005524
Vvi1g0261 676 Pfam ABC-2 type transporter 412 618 IPR013525 GO:0016020|GO:0140359
Vvi1g0261 676 MobiDBLite consensus disorder prediction 34 53 - -
Vvi1g0261 676 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0261 Vvi-Chr1 2429495 2433043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0261 106 310 Calmodulin-binding Proteins AT2G36910 26.066 4.37e-11 64.7