Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0243 ATGGTGAAGTTCTCTAAGCAGTTTGAGGGTCAGCTTGTTCCTGAATGGAAAGAGGCCTTTGTTGATTACTGGCAACTCAAGAAGGACATCAAGAAAATCCATCTTCTTAGCACCGCCACTAACAACATTCCCACCGCCAACCAACAGTACTCTTTGCCCAAAACCCTCTTCTCCTCTATAAGGAGGTTCTCTTTATTTGGCCATGAACGTAAAGACCATGGGGTCATTCAAGTTCACAAGAAACTCGCGTCATCAGCTAGTAAAGGGGACCTTTATGAGACTGAATTGCTTGAGCAAATTGCGGATACTGATGCTGCAAATGAGTTTTTTGCATGTTTGGATATGCAACTTAACAAAGTGAATCAGTTTTACAGAACAAAGGAGAAGGAGTTCCTCGAGAGGGGAGAGTCCTTGAAGGAGCAGATGGAGATTCTCATTGAGCTCAAATCTGCACTGAAGCGACAGCGTAACAAAGGATCCACTGCCCAGGACCCGAAGGAGGATGCCTCTATTTCCTGCACCATTTCATGTGAGGAAGAGTCCATTAAGGACAAAACAGAGCAAGAGCCAGCCCAAGACAACACTGCGGATGAGTTTGAGAGCAATGATGTGCAATTCTCAGACTCCCTAAAGTCGGATGAGATGGGGAAATCAATGAGAATGAAAAGAGAGGATGGGAAACTGAGGACTCTCTCTGGCCGTGTTTTCAATTGCCAGGGGAAGAACTTAAGGATCAACATTCCCCTGACAACACCTTCTCGTACCTTATCAGCAATCAGTTACTTAGTTTGGGGAGATTTGGTGAATCAGTCCTCAAGGAAATGTGGTCCAGAAGGAAGTAAACTAAACATCAACAAAACAAAGCTTCATCATGCAGAGAAGATGATTAAAGGAGCTTTCATTGAGCTTTACAAAGGGTTGGGTTATCTAAAAACCTACAGGAACTTGAACATGCTAGCTTTTGTAAAGATCTTGAAGAAGTTTGACAAGGTCACAGGAAAACAAGTTCTTCCCATTTATCTAAAAGTAGTTGAAAGCTCCTATTTCAACAGCTCAGACAAGGTAATGAAGTTAGAGGATGAGGTTGAGGAGCTCTTTACCAAACACTTTGCTGAGGAAGATAAAAGAAAGACCATGAAATACCTCAAACCCCATCAGAGGAAGGAATCACACACAGTAACCTTCTTCATAGGGCTATTCACCGGATGCTTCATTGCCCTGTTTGCTGGATATGTCATCATGGCTCATATTTCAGGGATGTACAGAGGGCAGTCAGATACCATCTACATGGAGACTGTCTACCCTGTGCTTAGCATGTTCAGTCTACTGTTTCTACACTTCTTTTTGTATGGTTGCAACATTGTCATGTGGAGAAAGGCTCGTATAAATTATAGCTTCATCTTTGAGCTGGCTCCCACCAAGGAGCTTAAATACAGAGATGTCTTTTTGATCTGTACTACGTCAATGACTGCTGTGGTGGGGGTTATGTTTGTTCACTTATCACTTGTGGCAAAAGGGAATTCATATAGCCGAGTTCAAGCCATCCCCGGTCTGCTGTGCCTGCTATTCTTGCTACTACTTGTGTGCCCCTTCAACATCATATATAAATCAAGCCGTTATCGTTTCCTTCGGGTGATAAGGAATACCATTTTGTCCCCTCTCTACAAGGTTGTCATGCTGGATTTCTTCATGGCTGACCAACTCTGTAGTCAGGTGCCGATGCTCAGGAACCTTGAGTATGTGGCTTGTTACTATATAACAGGAAGCTTCAAAACTCAGGACTATGGGTTCTGCATGAGGACCAAGCACTACAGAGATCTTGCTTATGCTGTTTCCTTCTTGCCTTATTACTGGAGAGCTATGCAGTGTGCCAGGCGATGGTTTGATGAAGGACAGACGACCCATCTGGTTAATCTGGGCAAATATGTATCGGCGATGTTAGCAGCAGGAGCCAAAGTGGCCTATGAGAAGGAGAGGAGTGTTGGATGGCTTTGCCTTGTTGTGGTTATGTCAAGTGCTGCAACAGTGTATCAATTGTATTGGGACTATGTAAGAGATTGGGGTTTGCTCCAGTTCCATTCCAAGAACCCCTGGCTAAGAAATGAATTAATGCTTCGCCGAAAAATCATTTACTACTTCTCCATGGGACTGAACCTTGTTCTCAGGCTTGCTTGGTTGCAAACTGTTCTCCATTCCAACTTTGAAGGTGTCGATTACAGAGTAACCGGGCTATTTTTAGCTGCCCTTGAAGTCATTAGAAGAGGACAGTGGAATTTCTACAGGTTGGAGAATGAGCATCTAAATAATGCAGGCAAGTTCAGAGCTGTTAAAACAGTGCCACTTCCTTTTCATGAAGTGGATGATGAAGACTGA 2373 0.4362 MVKFSKQFEGQLVPEWKEAFVDYWQLKKDIKKIHLLSTATNNIPTANQQYSLPKTLFSSIRRFSLFGHERKDHGVIQVHKKLASSASKGDLYETELLEQIADTDAANEFFACLDMQLNKVNQFYRTKEKEFLERGESLKEQMEILIELKSALKRQRNKGSTAQDPKEDASISCTISCEEESIKDKTEQEPAQDNTADEFESNDVQFSDSLKSDEMGKSMRMKREDGKLRTLSGRVFNCQGKNLRINIPLTTPSRTLSAISYLVWGDLVNQSSRKCGPEGSKLNINKTKLHHAEKMIKGAFIELYKGLGYLKTYRNLNMLAFVKILKKFDKVTGKQVLPIYLKVVESSYFNSSDKVMKLEDEVEELFTKHFAEEDKRKTMKYLKPHQRKESHTVTFFIGLFTGCFIALFAGYVIMAHISGMYRGQSDTIYMETVYPVLSMFSLLFLHFFLYGCNIVMWRKARINYSFIFELAPTKELKYRDVFLICTTSMTAVVGVMFVHLSLVAKGNSYSRVQAIPGLLCLLFLLLLVCPFNIIYKSSRYRFLRVIRNTILSPLYKVVMLDFFMADQLCSQVPMLRNLEYVACYYITGSFKTQDYGFCMRTKHYRDLAYAVSFLPYYWRAMQCARRWFDEGQTTHLVNLGKYVSAMLAAGAKVAYEKERSVGWLCLVVVMSSAATVYQLYWDYVRDWGLLQFHSKNPWLRNELMLRRKIIYYFSMGLNLVLRLAWLQTVLHSNFEGVDYRVTGLFLAALEVIRRGQWNFYRLENEHLNNAGKFRAVKTVPLPFHEVDDED* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0243 790 MobiDBLite consensus disorder prediction 195 212 - -
Vvi1g0243 790 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 2 787 - -
Vvi1g0243 790 ProSiteProfiles EXS domain profile. 599 790 IPR004342 GO:0016020
Vvi1g0243 790 Pfam EXS family 434 767 IPR004342 GO:0016020
Vvi1g0243 790 Coils Coil 135 158 - -
Vvi1g0243 790 MobiDBLite consensus disorder prediction 180 223 - -
Vvi1g0243 790 Pfam SPX domain 2 344 IPR004331 -
Vvi1g0243 790 CDD SPX_PHO1_like 3 338 IPR034092 -
Vvi1g0243 790 ProSiteProfiles SPX domain profile. 2 342 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0243 Vvi-Chr1 2286875 2292006 Dispersed