Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0239 ATGGCTGGCGGCCGGAGGGCGAAGCTGCATTTGAGCAAGATCTACACATACGCATGTGGGAAAACATCTTTGAAGGGTGATCATGAGCAGATTGGGCAACCCGGTTTTTCCAGGGTAGTTTTCTGCAACGAACCAGATCATTTTGAGGCCAAAATACGTAACTATGCAAACAATTATGTTAGGACTACAAAGTATACGCTAGCAAGTTTCTTGCCTAAATCCTTGTTTGAGCAGTTTAGGAGGGTTGCCAACTTTTTCTTCCTTGTAACCGGCATCTTGTCCTTCACTGATCTCGCCCCTTACTCTGCTGTCAGTGCCGTCCTCCCTCTAGTTATTGTGATTGCAGCCACCATGGTGAAAGAGGGTGTAGAGGATTGGCAGCGAAAACAACAGGATATTGAGGTGAACAATAGGAAAGTTAAAGTGCATGTTGGTGATGGAACTTTTCATGATACTGAATGGAGAAATCTTAGGGTTGGAGATGTAGTGAAGGTGGAGAAGGATCAATTTTTTCCAGCAGATATCCTCTTGCTCTCATCCAGTTATGACGATGCAATCTGCTATGTTGAAACCATGAGCCTCGATGGGGAGACGAATTTGAAAATGAAACAAGCTTTGGAGGCAACTTCATCCTTAAATGAAGATTCTAACTTCCAGAATTTTAAGGCTGTCATTAAATGTGAAGACCCGAATGCCAATTTGTATACATTTGTTGGAACTATGGAGTTGGAAGAGCAACATTGTCCCCTTAATCCACAACAACTTCTCCTTAGAGACTCAAAACTCCGGAATACTGATTACATATATGGGGCTGTCATCTTCACTGGTCATGATACAAAGGTCATTCAAAATTCAACTGATGCTCCCTCAAAGAGAAGCAGAGTTGAGAAGAAGATGGATAAACTTATCTACTTCTTGTTTTTCGTCTTATTTCTGATATCTTTTGTTGGATCCATTATCTTTGGAATTATTACTAAGGACGACCTTAAGAATGGGAGGATGACAAGGTGGTATCTTAGACCAGACGATACCACTATTTACTTTGACCCCAAAAGAGCACCGGTTGCAGCAATTCTTCACTTCCTGACAGCTGTGATGTTGTATGCATACATGATCCCAATTTCATTGTATGTTTCAATTGAAATTGTCAAGGTTCTGCAAAGCATCTTCATCAATCAAGATGTTCATATGTACGACAAGGAGACTGATAAACCAGCACATGCCCGTACATCAAATTTGAACGAGGAACTTGGCCAAGTCGACACAATACTTTCTGATAAGACAGGGACTTTGACATGCAACTCAATGGAGTTCATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCCGTGGTGTTACAGAGGTGGAGAGGGCTATGGCAAAAAGAAAAGGTTCACCATTGGCTCATGAATTGAATGGTTGGGATGAGGATGAAGATGCTCAAATTGGAAAACCACTCATTAAAGGCTACAATTTTAAAGACGAACGAATCATTCATGGAAATTGGGTTAATGAGCACAATGCAGACGTCATCCAGGGCTTTCTTCGTTTGTTGGCAATCTGTCATACTGCTATACCTGAAGTGAATGAAGTAACCGGGCAGGTTTCATATGAAGCCGAGTCACCAGATGAGGCAGCTTTTGTGATTGCAGCAAGAGAACTTGGTTTTGAGTTCTACAAAAGGACACAAACAAGCATCTCACTCCATGAGTTGGATCCTGTGTCTGGCAAGAAAGTTGAAAGGGTGTACGATCTCCTGAATGTTTTGGAGTTTAACAGCACAAGGAAGCGGATGTCCGTGATTGTGAGAAATGAGGAGGGGAAATTATTATTACTTTGTAAAGGTGCTGATAGTGTCATGTTTGAGAGGCTTGACAAGAATGGTCGGCAGTTTGAAGAGGACACAAGAAACCATGTAAATGAGTATGCTGATGCAGGCTTGAGGACTTTAATACTCGCTTATCGTGAACTTGATGAGGAAGAATATAAAGAGTTCAATAAGAAATTCAATGAGGCCAAGAGCTCGGTTAATGCAGACAGAGAAGCATTGATTGATGAAGTGACAGAGAAAATGGAGAAGAATTTGATTCTCCTAGGCGCAACTGCTGTTGAGGACAAACTTCAACATGGGGTTCCTGACTGCATTGATAAGCTTGCCCAGGCAGGGATAAAGATATGGGTTTTGACAGGAGATAAGATGGAGACTGCCATCAATATTGGTTTTGCTTGTAGTTTGCTTCGACAAGGAATGAAGCAGATAATAATCAGTTTGGAGACACCTGACATTAAAGCTTTGGAAAAAGTGGGAGACAAGGCTGTTATCATAAAGGCATCAAAAGAAAGTGTCGTCCACCAGATAGCAGCAGGGAAAGCCCAGGTTACTGCATCTAGTGGAAGCTCTGAGGCATATGCTTTGATCATTGATGGGAAATCACTGGCATATGCACTACAAGATGATGTCAAAAACTTGTTCCTTGAGCTTGCAATTGGGTGTGCTTCCGTTATTTGCTGTCGTTCATCACCAAAACAGAAGGCGCTGGTTACACGTCTGGTTAAACTTGGAACTGGGAAGACAACACTAGCAATTGGTGATGGCGCCAATGATGTGGGAATGCTTCAAGAAGCCGACATTGGGATTGGAATCAGTGGTGTTGAAGGGATGCAGGCAGTCATGTCAAGTGATATTGCGATTGCTCAGTTCCAGTATTTGGAGCGTTTGCTACTAGTCCACGGACATTGGTGTTATAGAAGGATCTCATTAATGATATGCTACTTCTTCTACAAGAACATCACATTTGCTTTTACTCTCTTCTTATATGAGGCACATGCGTCATTCTCTGGGCAACCTGCATACAATGATTGGTTTATGACGTTTTATAATGTGTTCTTCACATCACTTCCACCAATTGCTTTGGGTGTTTTTGACCAAGATGTCTCAGCACGGTTTTGTCTCAAGTTTCCTCTACTGTACCAAGAAGGAGTGCAGAATGTTCTTTTCAACTGGCGTCGAATACTCAGCTGGATGTTCAATGGGGTATACAGTGCCATCATAATCTTCTTCTTCTGCATAAAGGCACTGGACTCCGAGGCCTTCAATAGCGGGGGGAAAACTGTTGGGAGGGAGATCCTTGGGACAACAATGTATACATGTGTTGTATGGGTTGTGAACTGTCAGATGGCCCTTACTATAAGTTACTTCACCTTGATACAACATATCTTCATCTGGGGAAGTATTGCTCTCTGCTATACAGATGCGGTTCTTTCCTATGTACCATGGAATGATACAGTGGTTAAGGCATGA 3300 0.4233 MAGGRRAKLHLSKIYTYACGKTSLKGDHEQIGQPGFSRVVFCNEPDHFEAKIRNYANNYVRTTKYTLASFLPKSLFEQFRRVANFFFLVTGILSFTDLAPYSAVSAVLPLVIVIAATMVKEGVEDWQRKQQDIEVNNRKVKVHVGDGTFHDTEWRNLRVGDVVKVEKDQFFPADILLLSSSYDDAICYVETMSLDGETNLKMKQALEATSSLNEDSNFQNFKAVIKCEDPNANLYTFVGTMELEEQHCPLNPQQLLLRDSKLRNTDYIYGAVIFTGHDTKVIQNSTDAPSKRSRVEKKMDKLIYFLFFVLFLISFVGSIIFGIITKDDLKNGRMTRWYLRPDDTTIYFDPKRAPVAAILHFLTAVMLYAYMIPISLYVSIEIVKVLQSIFINQDVHMYDKETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMAKRKGSPLAHELNGWDEDEDAQIGKPLIKGYNFKDERIIHGNWVNEHNADVIQGFLRLLAICHTAIPEVNEVTGQVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHELDPVSGKKVERVYDLLNVLEFNSTRKRMSVIVRNEEGKLLLLCKGADSVMFERLDKNGRQFEEDTRNHVNEYADAGLRTLILAYRELDEEEYKEFNKKFNEAKSSVNADREALIDEVTEKMEKNLILLGATAVEDKLQHGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPDIKALEKVGDKAVIIKASKESVVHQIAAGKAQVTASSGSSEAYALIIDGKSLAYALQDDVKNLFLELAIGCASVICCRSSPKQKALVTRLVKLGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFQYLERLLLVHGHWCYRRISLMICYFFYKNITFAFTLFLYEAHASFSGQPAYNDWFMTFYNVFFTSLPPIALGVFDQDVSARFCLKFPLLYQEGVQNVLFNWRRILSWMFNGVYSAIIIFFFCIKALDSEAFNSGGKTVGREILGTTMYTCVVWVVNCQMALTISYFTLIQHIFIWGSIALCYTDAVLSYVPWNDTVVKA* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0239 1099 SFLD Haloacid Dehalogenase 406 913 - -
Vvi1g0239 1099 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Vvi1g0239 1099 FunFam Phospholipid-transporting ATPase 116 286 - -
Vvi1g0239 1099 NCBIfam phospholipid-translocating P-type ATPase 55 1082 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vvi1g0239 1099 SUPERFAMILY Calcium ATPase, transduction domain A 143 283 IPR008250 -
Vvi1g0239 1099 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vvi1g0239 1099 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 1092 IPR023298 -
Vvi1g0239 1099 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1083 IPR032630 -
Vvi1g0239 1099 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Vvi1g0239 1099 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vvi1g0239 1099 Gene3D - 698 902 IPR023214 -
Vvi1g0239 1099 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 1082 - -
Vvi1g0239 1099 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 699 IPR023299 GO:0000166
Vvi1g0239 1099 FunFam Phospholipid-transporting ATPase 698 902 - -
Vvi1g0239 1099 Pfam Cation transport ATPase (P-type) 533 624 - -
Vvi1g0239 1099 Gene3D - 542 697 IPR023299 GO:0000166
Vvi1g0239 1099 Pfam E1-E2 ATPase 136 382 - -
Vvi1g0239 1099 SFLD p-type atpase 406 913 IPR044492 -
Vvi1g0239 1099 NCBIfam HAD-IC family P-type ATPase 828 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0239 1099 SUPERFAMILY HAD-like 419 917 IPR036412 -
Vvi1g0239 1099 Gene3D - 111 286 - -
Vvi1g0239 1099 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Vvi1g0239 1099 FunFam Phospholipid-transporting ATPase 540 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0239 Vvi-Chr1 2254069 2261220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0239 9 1082 Primary Pumps ATPases AT1G68710 75.543 0.0 1749