Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0238 ATGGTTATGGATACACTGAAATCTGATCAGCTAACGCAGCTAAAAGACATATTCAAGCGCTTTGACATGGACTCGGATGGCAGCCTAACCCAACTAGAGCTTGCAGCTCTCTTAAGGTCTCTTGGGCTCAAGCCTACAGGCGACCAACTGCAAGTATTGTTGACCAACATGGACGCCAATGGCAATGGGTCCATCGAGTTTGATGAATTAGTGGAGGCTATTTTGCCAGACTTGAATGAGCAGATACTAGTCAACCAGGAGCAGCTCACAGAGGTTTTCAGATCATTTGATCGAGATGGCAACGGCTACATAACTGCATCTGAGCTTGCAGGGTCCATGGCCAAGATGGGGAGTCCCTTGTCATATCGAGAACTCTCTGATATGATGAGAGAAGCCGACATTAATGGAGATGGCGTCATTAGCTTTAACGAGTTTGCAACCATCATGGCCAAGTCTGCTGCAGATTTCCTTGGCCTTGCGGTGTTCTAG 489 0.4744 MVMDTLKSDQLTQLKDIFKRFDMDSDGSLTQLELAALLRSLGLKPTGDQLQVLLTNMDANGNGSIEFDELVEAILPDLNEQILVNQEQLTEVFRSFDRDGNGYITASELAGSMAKMGSPLSYRELSDMMREADINGDGVISFNEFATIMAKSAADFLGLAVF* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0238 162 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Vvi1g0238 162 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Vvi1g0238 162 Gene3D - 2 79 - -
Vvi1g0238 162 CDD EFh 88 150 IPR002048 GO:0005509
Vvi1g0238 162 ProSitePatterns EF-hand calcium-binding domain. 133 145 IPR018247 -
Vvi1g0238 162 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Vvi1g0238 162 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Vvi1g0238 162 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Vvi1g0238 162 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Vvi1g0238 162 SUPERFAMILY EF-hand 4 150 IPR011992 -
Vvi1g0238 162 Gene3D - 80 157 - -
Vvi1g0238 162 PANTHER CALCIUM BINDING PROTEIN 85 149 - -
Vvi1g0238 162 FunFam Probable calcium-binding protein CML16 3 155 - -
Vvi1g0238 162 Pfam EF-hand domain pair 87 149 IPR002048 GO:0005509
Vvi1g0238 162 Pfam EF-hand domain pair 12 74 IPR002048 GO:0005509
Vvi1g0238 162 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Vvi1g0238 162 SMART efh_1 13 41 IPR002048 GO:0005509
Vvi1g0238 162 SMART efh_1 124 152 IPR002048 GO:0005509
Vvi1g0238 162 SMART efh_1 49 77 IPR002048 GO:0005509
Vvi1g0238 162 SMART efh_1 88 116 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0238 Vvi-Chr1 2251802 2252290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0238 5 159 EF-hand Containing Proteins AT3G25600 78.710 2.40e-88 253