Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0237 ATGGCCACGGCGTCGCCGCCTCCTAATTCTTCTCCTTCCGCGGTTCCTCCGACCTCTGCCGCCACTCCACCACCGCCCTTGTCTTCTCCTCCTCCTCCTCCGGAGTCTTCTACTCCTCCATCTTCCCAGCCCAATGCAGATCCACCGGATGGTGCAGCAGGTTCTACTTCATCCCCACCACCTCAATCACCTCCTGCTGTTCCAGCAGCGCCACCTCCAGCATCACCACCACCACCACCACCAACTCCTTCCCTAGCCAATTCTCCTTCGTCGCCTCCACCTCCTTCTCCTCCACCCCCTTCTCCCAATGCTCCTCCACCGACTCCTCCGCCATCTCCACCCATTGCTCCAGTTCCGCCTCCCTCCAATCCCTCACCTCCGCCATTAACACCACCACCAACTTCACCTCCACCGCCACCACCACCGACCAATCCGCCCAGGAGTCCGCCTCCCCCACCACCTACAGAACCACCAGTGACTTCACCTCCTCCACCATCTTCAAACCCCCCTAAAAGTTCACCACCACCATCAGAACCACCAAAAACCTCACCCCCACCACCATCTAAACCACCCCCTGTTTCACCACCATCACCATCACCATCAAGTCCACCTGAGGATTCACCTCCACCACCTGTACCTGTGCCACCCAGTAATTCAACCCCTCCCGCCCCGTCTCCATCTGGTTCTCAACCAGCAACTCCACCCTCTCCAAATTCTCCTCCAAAAGGATCGCCACCACCACCCAGGACACCAACTCCACCTCCTCCTGCACGTTCCCCACCACCTCTTTCTCCCCCTTCATCTCCTCAAACTCCAAACTCGCCATCAGATAGCCCATCTGTGAACAATTCTACCCCCAATGGAAGTCCAAATTCTACAAGTAAAGGAGGCATTGGTACTGTAGGTACAGTGGCTATTGGATTGGTACTGGGTTTAGTAGTACTTGTTCTCATTGGAGTGGCTTTCTTGTGCCTGCGGAAGCGGAAGAAAAAGGTATCTGGACTTAATGGTGGCTATGTTATGCCAGCCACACTGGGTTCTTCTCCGAGATCAGATTCATCTTTTACAAAGACACTGTCTTCAGCTCCCCTCATAGGAAGTGGTTCGGGTAGCGACTTTGTATACTCACCATCTGAGCCAGGAGGATTAGGCAATTCAAGATCATGGTTTACATATGAAGAACTAGTCAAGGCAACAAATGGATTTTCAACTCAAAATCTTCTGGGCGAAGGTGGATTTGGTTCTGTATATAAAGGATACCTGCCAGACGGGAGAGAGATAGCAGTAAAGCAGCTAAAGATTGGTGGGGCCCAGGGAGAGCGAGAATTTAAAGCTGAAGTTGAGATTATTAGTCGGATACACCATCGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGGGGAAGGTAGGCCAGTTATGGACTGGGCAACACGTGTTAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTATCTTCATGAAGACTGCCATCCTCGGGTTATTCACAGGGATATTAAGTCTTCAAATATTCTTTTAAATTATAACTTTGAAGCTCAGGTTTCAGATTTTGGACTTGCTAAATTAGCTCTAGATGCTGATACTCACGTAACAACACGTGTAATGGGGACTTTTGGGTACGCAACCCCTCTATGA 1719 0.5108 MATASPPPNSSPSAVPPTSAATPPPPLSSPPPPPESSTPPSSQPNADPPDGAAGSTSSPPPQSPPAVPAAPPPASPPPPPPTPSLANSPSSPPPPSPPPPSPNAPPPTPPPSPPIAPVPPPSNPSPPPLTPPPTSPPPPPPPTNPPRSPPPPPPTEPPVTSPPPPSSNPPKSSPPPSEPPKTSPPPPSKPPPVSPPSPSPSSPPEDSPPPPVPVPPSNSTPPAPSPSGSQPATPPSPNSPPKGSPPPPRTPTPPPPARSPPPLSPPSSPQTPNSPSDSPSVNNSTPNGSPNSTSKGGIGTVGTVAIGLVLGLVVLVLIGVAFLCLRKRKKKVSGLNGGYVMPATLGSSPRSDSSFTKTLSSAPLIGSGSGSDFVYSPSEPGGLGNSRSWFTYEELVKATNGFSTQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGAQGEREFKAEVEIISRIHHRHLVSLVGYCISESQRLLVYDYVPNNTLYFHLHGEGRPVMDWATRVKVAAGAARGIAYLHEDCHPRVIHRDIKSSNILLNYNFEAQVSDFGLAKLALDADTHVTTRVMGTFGYATPL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0237 572 FunFam Protein kinase superfamily protein 478 550 - -
Vvi1g0237 572 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Vvi1g0237 572 MobiDBLite consensus disorder prediction 54 273 - -
Vvi1g0237 572 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 312 571 IPR047117 -
Vvi1g0237 572 PRINTS Proline rich extensin signature 60 85 - -
Vvi1g0237 572 PRINTS Proline rich extensin signature 36 53 - -
Vvi1g0237 572 PRINTS Proline rich extensin signature 1 17 - -
Vvi1g0237 572 PRINTS Proline rich extensin signature 17 33 - -
Vvi1g0237 572 Gene3D Phosphorylase Kinase; domain 1 381 477 - -
Vvi1g0237 572 Pfam Protein kinase domain 403 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0237 572 SUPERFAMILY Protein kinase-like (PK-like) 383 571 IPR011009 -
Vvi1g0237 572 SMART serkin_6 402 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0237 572 MobiDBLite consensus disorder prediction 274 296 - -
Vvi1g0237 572 MobiDBLite consensus disorder prediction 9 46 - -
Vvi1g0237 572 ProSiteProfiles Protein kinase domain profile. 402 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0237 572 FunFam Proline-rich receptor-like protein kinase PERK8 374 477 - -
Vvi1g0237 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vvi1g0237 572 Gene3D Transferase(Phosphotransferase) domain 1 478 571 - -
Vvi1g0237 572 MobiDBLite consensus disorder prediction 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0237 Vvi-Chr1 2242232 2245334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0237 303 571 Trihelix Transcription Factor Family AT1G26150 70.370 2.18e-143 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vvi1g0237 Pkinase 2.9e-30 CL0016