Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0232 ATGAGCATTCTACCAGCAAGTTCAGCTCTTCCTCTCTCCCCCATTCTGATGCTATGCTTCTTCATCTTCATCTGCTATAAGCTCTTTCCCAAGATCATCCCTCACCCCATCATGTCCAATTACATAATTCCAACCGCTGCCCATCTGACATGGGCATGGGATTTCTTGCTTCACTATTCTCTCTTTCCTAATTCTCATCACAATACGAATGTGCCGGAAAATGGTGACCAGGGACTAGGCCTGGGGCTCTACAAACCTGAGCCGGGGTCGAAGGAGGCAGTAGATTGTGTAGTGTGCCTATGCAAGATTGAAGAAGGAGAAGAGATAAGAGAGTTGAGGTGTGGTCACATGTTTCACAGAGATTGCCTGGACAGATGGGTTAGACAGAGAAACGGAACATGTCCCTTGTGTCGAGGTTGTCTTGCCCCTCCAAGAATGGTGAATGAGGCGGGAGAGGAAGCGATAGTTTTCAACTTTTGTTCATTCAGTTCCAGTAGTCGCACTGTGTGGTGGCTGCGCTAG 522 0.4808 MSILPASSALPLSPILMLCFFIFICYKLFPKIIPHPIMSNYIIPTAAHLTWAWDFLLHYSLFPNSHHNTNVPENGDQGLGLGLYKPEPGSKEAVDCVVCLCKIEEGEEIRELRCGHMFHRDCLDRWVRQRNGTCPLCRGCLAPPRMVNEAGEEAIVFNFCSFSSSSRTVWWLR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0232 173 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vvi1g0232 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 143 IPR013083 -
Vvi1g0232 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 71 150 - -
Vvi1g0232 173 SMART ring_2 96 137 IPR001841 -
Vvi1g0232 173 Pfam Ring finger domain 95 138 IPR001841 -
Vvi1g0232 173 SUPERFAMILY RING/U-box 95 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0232 Vvi-Chr1 2187458 2187979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0232 95 150 C3H Transcription Factor Family AT1G15100 53.571 1.16e-16 71.2