Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0231 ATGAGCATTCCACCAAGAAGTTCAGCTCTTCCTCTCTTTCCCGTTCTGATGCTATGCTTCTTTATCTTCATCTGCTATAAGCTCTTTCCCAAGTTAATCCCTCGCTCCATCATGTCAAATTACATAATTCCAACCGCCGCTCATTTGACATGGGCGTGGGATTTCTTGCTTCACCATTCCCTATTTCTTAATTCTCATCACAATATGAATGTGCCTAAAAATGGTGATCAGGGACTAGGACTAGGGCTCTACAGACCCGAGCTGGGGTCAAATGAGGTGGCTGAGTGTGCAGTGTGCCTGTGCAAGATTGAAGAAGGAGAAGAGATAAGAGAGTTGAGGTGTGATCATATGTTTCACAGAGATTGCCTGGACAGATGGGTTGGGCATAGAAATGGCACATGTCCCTTGTGTCGCGGTTGCCTTGCTCCTCCAAGAATGGTGAATGAGGTGGGAGAGGAAGTAATAGTTTTCAGGTATTGTTCATTCAGTTCCAGTACTCGGTCTATGTGGTGGCTGCGCTGA 522 0.4617 MSIPPRSSALPLFPVLMLCFFIFICYKLFPKLIPRSIMSNYIIPTAAHLTWAWDFLLHHSLFLNSHHNMNVPKNGDQGLGLGLYRPELGSNEVAECAVCLCKIEEGEEIRELRCDHMFHRDCLDRWVGHRNGTCPLCRGCLAPPRMVNEVGEEVIVFRYCSFSSSTRSMWWLR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0231 173 SUPERFAMILY RING/U-box 95 148 - -
Vvi1g0231 173 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vvi1g0231 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 83 168 - -
Vvi1g0231 173 SMART ring_2 96 137 IPR001841 -
Vvi1g0231 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 143 IPR013083 -
Vvi1g0231 173 Pfam Ring finger domain 95 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0231 Vvi-Chr1 2171001 2171522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0231 84 154 C3H Transcription Factor Family AT1G15100 43.662 1.27e-15 68.6