Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0229 ATGAACTTTCTACTAACAAGTTCACCTCTTTTTCTCTTCCCCATTCTGATGCTATGCACCTTCATCTTCATCCGCCATGAGCTCTTTCCCAAGTTCATTCCTCAATCCATCATGTCCAATTATATAACTCCAACTGCTTCCCATTTGGCTTGGGCATGGGATTTCTTGCTTCACTACTCCCTCTTTCCTAATTCGCACAAAATTAATGTGCATGAAAATTTTGACCAGGGACTAAACATAGGGCTCTATGAGCCTGAGGAGGGGTCGAATGAGGTGGTAGAGTGTGCGGTGTGTCTATGCAAGATTGAAGAAGGAGAAGAGGTAAGAGAGTTGAGGTGTGGTCATATGTTTCACAGAGATTGCCTGGACAGATGGCTTGGACATAGAAATGGAACATGTCCCTTGTGTCGAAGTTGTACTGCTCCTTCAAGAATGGTGAATGAGGTGGGAGAGGAAGTGATAGTGGTCAAGTTTTCTTCATCCAGTCCTGGCAATCGCAGTATGTGGTGGCTGCGCTAA 519 0.4489 MNFLLTSSPLFLFPILMLCTFIFIRHELFPKFIPQSIMSNYITPTASHLAWAWDFLLHYSLFPNSHKINVHENFDQGLNIGLYEPEEGSNEVVECAVCLCKIEEGEEVRELRCGHMFHRDCLDRWLGHRNGTCPLCRSCTAPSRMVNEVGEEVIVVKFSSSSPGNRSMWWLR* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0229 172 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Vvi1g0229 172 SUPERFAMILY RING/U-box 94 143 - -
Vvi1g0229 172 CDD RING-H2_PA-TM-RING 94 137 - -
Vvi1g0229 172 SMART ring_2 95 136 IPR001841 -
Vvi1g0229 172 Pfam Ring finger domain 94 137 IPR001841 -
Vvi1g0229 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 143 IPR013083 -
Vvi1g0229 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 76 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0229 Vvi-Chr1 2147544 2148062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0229 94 154 C3H Transcription Factor Family AT1G15100 49.231 2.06e-15 68.2