Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0228 | ATGGTGAATTACATAGTTTTACCCATTACCCATTTCAAATGGGCATGGAGTTTCTTGTTCCACCGCTTCTCCTTTGCAAGTTACACACTTGGCATGCTGGAAAATGGTGAGGAAGAACTCAGGATAGGCCACTATAAGGTTAAATTAGGCTCTGAGGAATCAGAAGAAGAATGTGCTGTCTGTCTATGCAAGATTGAAGAAGGAGATGAGATAAGCGACTTGAGATGCGATCATCTGTTTCACAAAGTTTGCTTGGATAGATGGGTTCAGTATAAGCGATCAACCTGTCCGCTGTGTCGTGATTCTCTAGCTCCATGTAGAGCTGTTGCTGAGCTGGGTCAAGAGGTGCTTGTGTTTAGGTTTTGCTCTTTCAGCTCCGGTGACCGGAATAGTTGGTGGCTGCGCTAA | 408 | 0.4485 | MVNYIVLPITHFKWAWSFLFHRFSFASYTLGMLENGEEELRIGHYKVKLGSEESEEECAVCLCKIEEGDEISDLRCDHLFHKVCLDRWVQYKRSTCPLCRDSLAPCRAVAELGQEVLVFRFCSFSSGDRNSWWLR* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0228 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 100 | IPR001841 | - | |
| Vvi1g0228 | 135 | SMART | ring_2 | 58 | 99 | IPR001841 | - | |
| Vvi1g0228 | 135 | SMART | ringv_2 | 57 | 100 | IPR011016 | GO:0008270 | |
| Vvi1g0228 | 135 | SUPERFAMILY | RING/U-box | 52 | 106 | - | - | |
| Vvi1g0228 | 135 | PANTHER | - | 31 | 108 | IPR044249 | - | |
| Vvi1g0228 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 106 | IPR013083 | - | |
| Vvi1g0228 | 135 | Pfam | Ring finger domain | 57 | 100 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0228 | Vvi-Chr1 | 2145560 | 2145967 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0228 | 52 | 104 | C3H Transcription Factor Family | AT2G04240 | 49.057 | 1.78e-14 | 64.7 |