Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0226 ATGCCCCATATCTCAGCCTTTCCTTCTTCGCTTCTTTCATTCTGTATTTCCATCTTCCATGCCGTACTTCCCAAAGTCTTTCCAGGGTCGATCGTGTCAAGCTACATGGTTCTACCCACGACCCATTTGAGTCGGGCGTGGAATTTGTTGATTCACCACTTCTCCTCTGCAGCTTACACACTTGATCACATGCCAGGAAATGACGATGAACAACCCAGCATAAGCCAGTATAAGGTCAAGTTAGGCTGTGAGGAGGGAGAAGAATGTGCTGTGTGTCTATGCAAGATTGAAGCAGGAGAGGAGATCAGAGAATTGAGATGTGACCATCTCTTTCACAGAGTTTGCTTGGACAGATGGCTTCAATATAAGCGCGCAACCTGTCCACTGTGCCGCGGCTCTCTTGCACCGCGTAGAGCAGTCGGAGAGCTTGGTGAACAAACTCTAGTGTTTAGGTTTTGTTCTCTCAGTTCCAGTGACCGGTGTAATTGGTGGCTACGGTAA 501 0.481 MPHISAFPSSLLSFCISIFHAVLPKVFPGSIVSSYMVLPTTHLSRAWNLLIHHFSSAAYTLDHMPGNDDEQPSISQYKVKLGCEEGEECAVCLCKIEAGEEIRELRCDHLFHRVCLDRWLQYKRATCPLCRGSLAPRRAVGELGEQTLVFRFCSLSSSDRCNWWLR* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0226 166 PANTHER - 67 139 IPR044249 -
Vvi1g0226 166 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vvi1g0226 166 SMART ringv_2 88 131 IPR011016 GO:0008270
Vvi1g0226 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 138 IPR013083 -
Vvi1g0226 166 SUPERFAMILY RING/U-box 75 137 - -
Vvi1g0226 166 Pfam Ring finger domain 88 131 IPR001841 -
Vvi1g0226 166 SMART ring_2 89 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0226 Vvi-Chr1 2136955 2137455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0226 55 136 C3H Transcription Factor Family AT4G00305 36.145 1.80e-14 64.7