Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0225 ATGGGCATTGTTTCAACAACTCCATCTTTTCCTCTCTTTCCCATTCTCATGTGGTCATGCTTCTTCATCTTCATCTGCCATAAGCTCTTTCCCAAGATCATCCCTCGCTCAATCTTGTTCAATTACATAATTCCAACCGCTGCCCATTTGTCACGGGCATGGGATTTCTTGCTTCACTACTCTCTCTTTCCTAATTCTCATCACAATATGAGTGTGCTGGAAAATGGTGACCCGGGACTAAGCCTAGGGCTCTACAAACCCAAGCCGGGGTCGAAGGAGGTGGTAGAGTGTGCAGTGTGCCTATGCACGATAGAAGAAGGAGAAGAGATAAGAGAGTTGAGGTGTGGTCATATGTTTCACAGAGATTGCCTGGACAGATGGGTTGGACATAGAAATGGCACATGTCCCTTGTGTCGCGGTTGCCTTGCTCCTCCAAGAATGGTGAATGACGTGGGAGAGGAAGTAATAGTTTTCAGGTATTGTTCATTCAGTTCCAGGACTCGGTCTATGTGGTGGCTGCGCTGA 525 0.4724 MGIVSTTPSFPLFPILMWSCFFIFICHKLFPKIIPRSILFNYIIPTAAHLSRAWDFLLHYSLFPNSHHNMSVLENGDPGLSLGLYKPKPGSKEVVECAVCLCTIEEGEEIRELRCGHMFHRDCLDRWVGHRNGTCPLCRGCLAPPRMVNDVGEEVIVFRYCSFSSRTRSMWWLR* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0225 174 SUPERFAMILY RING/U-box 96 152 - -
Vvi1g0225 174 Pfam Ring finger domain 96 139 IPR001841 -
Vvi1g0225 174 CDD RING-H2_PA-TM-RING 96 139 - -
Vvi1g0225 174 SMART ring_2 97 138 IPR001841 -
Vvi1g0225 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 144 IPR013083 -
Vvi1g0225 174 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vvi1g0225 174 PANTHER - 85 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0225 Vvi-Chr1 2131271 2131795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0225 96 155 C3H Transcription Factor Family AT1G15100 45.000 6.62e-14 63.9