Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0219 ATGGAAGATCCAACACTATGTGCCAATGGATGTGGCTTCTTTGGGACACCTGCCACTCAAAACCTATGTTCCAAGTGTTATAGAGATTTTCTCAAGGAAGAAGAAGAGTCTACGAAAGCAAAAGCCATGTCCATGAAGAAAGCTATAAGGCCAAGAGTAGAGTCAACCTCATCCTTAGATGATGTTGCCATCTCCATGGTTCAACTATCTTTATCTTTTGATAATACTAAAAAGACTATTAATGGTAATTCTTCCACGAAGAAGTCGGAGCAATGCGAGATGTGTAAGAAGAAGGTGGGAATCATAGGATTCAAGTGCCGGTGTGGAAGTATGTTCTGTGGGAAGCATCGTTTGCCCGAAAAGCATGAATGCAACTTCGACTACAAGGCTATGGGACGTGAGATTTTGATGAAGCAAAACCCACCATTGAAGCCTGAGAAGTTACCAGGAGAGAACTTCGATTGA 465 0.4215 MEDPTLCANGCGFFGTPATQNLCSKCYRDFLKEEEESTKAKAMSMKKAIRPRVESTSSLDDVAISMVQLSLSFDNTKKTINGNSSTKKSEQCEMCKKKVGIIGFKCRCGSMFCGKHRLPEKHECNFDYKAMGREILMKQNPPLKPEKLPGENFD* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0219 154 SMART A20_3 4 28 IPR002653 GO:0003677|GO:0008270
Vvi1g0219 154 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 51 - -
Vvi1g0219 154 SUPERFAMILY AN1-like Zinc finger 77 145 IPR035896 -
Vvi1g0219 154 SMART AN1_Zf_4 92 129 IPR000058 GO:0008270
Vvi1g0219 154 Gene3D - 69 147 IPR035896 -
Vvi1g0219 154 Pfam AN1-like Zinc finger 92 129 IPR000058 GO:0008270
Vvi1g0219 154 Gene3D - 1 50 - -
Vvi1g0219 154 ProSiteProfiles Zinc finger A20-type profile. 1 35 IPR002653 GO:0003677|GO:0008270
Vvi1g0219 154 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 47 - -
Vvi1g0219 154 FunFam Zinc finger AN1-type containing 6 67 147 - -
Vvi1g0219 154 Pfam A20-like zinc finger 6 28 IPR002653 GO:0003677|GO:0008270
Vvi1g0219 154 ProSiteProfiles Zinc finger AN1-type profile. 86 132 IPR000058 GO:0008270
Vvi1g0219 154 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0219 Vvi-Chr1 2075903 2076512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0219 2 148 C2H2 Transcription Factor Family AT3G52800 36.943 4.42e-28 100