Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0218 ATGAACCAGTTTAAGCCAATCTTTTTAGGGACTGCTGATCCAAACACTGCCTTGAGTAAACTAACTCGTGCTTGCAACACCCAAAAGTGTATCCGAGCTGGTGGGAAACACAATGATCTTGATGACGTGGGAAAAGATACTTACCACCACACATTCTTTGAGATGCTTGGTAATTGGTCATTTGGGGATTACTTCAAAAAGGAAGCTATTGAATGGGCTTGGGAGCTTCTCACCAAGGTGTATAAACTACCTACTGATCGTATTTATGCCACTTATTTTGGTGGTGATGAGAAATCTGGTCTATCTCCTGATACTGAAGCTAGGGATATGTGGCTCAAGTTTTTGCCACCTGGACATGTATTGCCCTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGTCCTTGTGGGCCTTGCACTGAAATACATTTTGATAGAATTGGTAATCGTGATGCTGCATCATTGGTTAACAATGATGACCCTACGTGTATTGAGATATGGAACCTCGTGTTTATACAGTTCAACAGGGAAAGCGATGGTTCTCTTAAATCTCTGCCTGCTAAACATGTTGACACTGGAATGGGCTTTGAAAGATTGACTTCTATTCTTCAGGGCAAGATGAGCAATTATGATACTGATGTGTTCTTACCCATCTTTGATGCTATTCAACAGGCGACTGGTGCTCGACCATATTCAGGGAAAGTTGGATCAGATGATGCAGACAAAGTTGACATGGCATACAGGGTTGTTGCTGATCACATAAGAACACTTTCTTTTGCTATTGCTGATGGTTCTTGTCCAGGCAATGAGGGCCGTGAATACGTTCTGAGGCGTATTCTCCGTAGAGCTGTTCGTTATGGAAGTGAAGTTCTGAAAGCACAAGAAGGATTCTTCAATAGCTTCGTAAACATTGTTGTAAAGGTGATGGGTGATGTTTTCCCTGAACTGAAACAACGTGAAGTGCACATCAGGGAAATAATTGCTGAAGAGGAAGCAAGTTTTGGCAAGACATTACTTAAGGGAATCGAGAAATTTAAGAAGGCTGCTCAGGAAGTTCAGGGGAAGATATTGAATGGACAGGATGCATTTGTATTGTGGGACACATATGGCTTTCCTTTGGACCTGACTCAGTTGATGGCAGAGGAAAGAGGCTTAATTGTTGATGTTCAGGGTTTCAATGCTGCCCTGGATGAGGCAAGGGAAAGATCAAGAAGCGCTCAGAATAAGCAAGCTGGTGGCACTATTGTCATGGATGCTGATGCTACCTCAGCTTTGCACAAGCGGGGAGTTGCTCCAACAGATGATTCCTTCAAGTTCACATGGTTCCAGGATCATGGAAGTGTAATCAAAGCTATTTACTCCGGATCTGAGTTCTTGGAAAGTGCTTCTGCTGGGAATGAAGTTGGAATTGTTCTAGAAACAACAAGTTTTTATGCTGAACAAGGTGGTCAGATTTTTGATACCGGGTCACTTGAGGGAACCTCCGGGTCATTTCAAGTTTGTAATGTTCAAATTTATGGTGGCTTCATTCTTCATATTGGTTCCTTCACTGAAGCATCTGGCAGATTCTCTGTAGGTGATAAAGTAATATGTAAGGTTGACTATGACAGGCGTAAAGTCATTGCTCCTAACCATACCTGTACACATATGTTGAACTTTGCTCTTAGGGAAGTACTTGGCAATCATGTTGATCAGAAGGGATCCATTGTTCTTCCTGAGAAGTTACGATTTGATTTTTCTCATGGCAAGCCCGTTCATCCTGATCATTTAAGAAAGATTGAGTCAATTGTGAATGAGCAAATCGATGCTGAGTTAGATGTATTTTCAAAGGATGCAAGCCTTGCTGATGCCAAGAGTATAAATGGCTTACGAGCTGTTTTTGGAGAAGTTTATCCAGACCCAGTTAGGGTTGTGTCAATTGGTCAAAAAGTGGAGGATCTCTTGGCTGATCCAGGAAATGAAAAATGGTTATCAATTTCTGCAGAACTTTGTGGAGGTACCCATATATCAAATACCCGAGAGGCTAAGGCATTTGCTCTTTTATCTGAGGAAGGAATCGCCAAGGGAATCCGAAGGATTACTGCTGTTACAACTGATGTTGCTTTTAAGGCAATAGAGTTGGCACGCTCGCTTGAACAGGAAGTGGATGATGCATCTAAGACGGAAGGGATCTCGTTGGAAAAGAAAGTTGCTTCTTTAAGAAGTCGTGTTGACTCTGCGCCTATTCCAGCAGCCAGGAAAGCTGATCTCAGGGCCAAGATTTCCCTACTTCAGGATCAAGTCAGGAAGGCACAAAAGAAGTTCGCTGAAGAAAATATACAGAAAGCTGTCAAGGCTGCAACTGATATGGCCCAGCTTGCTGCTTCAGATGGAAAAACATTCTGCATCTCTCATGTGGATGTTGGTTTAGATACAACTGCAGTGCGTGAAGCAGTCCTAAAAGTCATAGAGCAAAAGGGAATATCGGTGATGATTTTCAGTACAGATGAAACCACTAACAAGGCGGTAGTGTATGCTGGAGTGCCACAGAAGGGAGATAAAGCAAAGCAGTTAGAGGTGTCAGAATGGTTGACAGCAGCTTTAGGGCCTCTAAAAGGGCGATGTGGTAAAGGAAAAGGCGGTCTTGCTCAAGGCCAGGGTACAGATGCATCGCATGTGAAGGAGGCCATGGATGTGGCAGAAAATTTTGCATCAATGAAATTGAGATGA 2715 0.4295 MNQFKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKFLPPGHVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQGKILNGQDAFVLWDTYGFPLDLTQLMAEERGLIVDVQGFNAALDEARERSRSAQNKQAGGTIVMDADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLETTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGDKVICKVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQEVDDASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQKAVKAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFSTDETTNKAVVYAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVKEAMDVAENFASMKLR* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0218 904 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 1 709 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vvi1g0218 904 Gene3D - 461 535 - -
Vvi1g0218 904 SUPERFAMILY Class II aaRS and biotin synthetases 1 212 IPR045864 -
Vvi1g0218 904 SUPERFAMILY ThrRS/AlaRS common domain 535 713 IPR018163 GO:0000166
Vvi1g0218 904 Coils Coil 391 411 - -
Vvi1g0218 904 Pfam tRNA synthetases class II (A) 1 539 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi1g0218 904 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 637 695 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi1g0218 904 Gene3D Bira Bifunctional Protein; Domain 2 1 209 IPR045864 -
Vvi1g0218 904 Pfam DHHA1 domain 752 897 IPR003156 GO:0003676
Vvi1g0218 904 FunFam Alanine--tRNA ligase, cytoplasmic 536 711 - -
Vvi1g0218 904 FunFam Alanine--tRNA ligase 791 899 - -
Vvi1g0218 904 SUPERFAMILY Translation proteins 460 535 IPR009000 -
Vvi1g0218 904 Gene3D - 536 712 - -
Vvi1g0218 904 FunFam Alanine--tRNA ligase 434 534 - -
Vvi1g0218 904 CDD AlaRS_core 1 208 - -
Vvi1g0218 904 FunFam Alanine--tRNA ligase, cytoplasmic 1 209 - -
Vvi1g0218 904 Coils Coil 749 776 - -
Vvi1g0218 904 SMART tRNA_SAD_4 637 696 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi1g0218 904 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 213 413 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vvi1g0218 904 Gene3D - 790 899 - -
Vvi1g0218 904 Hamap Alanine--tRNA ligase [alaS]. 1 903 IPR023033 GO:0004813
Vvi1g0218 904 PANTHER ALANYL-TRNA SYNTHETASE 1 901 - -
Vvi1g0218 904 NCBIfam alanine--tRNA ligase 1 882 IPR002318 GO:0000166|GO:0005737
Vvi1g0218 904 PRINTS Alanyl-tRNA synthetase signature 166 177 IPR002318 GO:0000166|GO:0005737
Vvi1g0218 904 PRINTS Alanyl-tRNA synthetase signature 250 266 IPR002318 GO:0000166|GO:0005737
Vvi1g0218 904 PRINTS Alanyl-tRNA synthetase signature 38 49 IPR002318 GO:0000166|GO:0005737
Vvi1g0218 904 PRINTS Alanyl-tRNA synthetase signature 274 287 IPR002318 GO:0000166|GO:0005737
Vvi1g0218 904 PRINTS Alanyl-tRNA synthetase signature 193 206 IPR002318 GO:0000166|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0218 Vvi-Chr1 2042316 2061630 Dispersed