Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0217 ATGTCTCGCCAAGTGGCCACGTCGCATTTCCACAAATCGAAGACTCTCGACAACAAATATATGCTTGGAGATGAGATCGGAAAAGGAGCATATGGTCGAGTTTACAAGGGTTTGGATTTGGAGAATGGAGACTTTGTTGCAATTAAACAAGTTTCTTTGGAGAATATTGCTCAAGAAGATCTCAACATTATCATGCAAGAGATTGATCTGCTCAAGAATTTGAACCACAAAAACATTGTGAAATATCTTGGATCTTTGAAGACAAGGAGTCATCTGCACATAATTCTTGAGTATGTGGAGAATGGCTCACTTGCAAACATCATCAAACCAAATAAATTTGGGCCATTTCCAGAATCACTGGTGGCTGTTTATATCTCTCAGGTCTTGGAGGGCTTGGTTTATCTACATGAACAAGGTGTCATCCATCGGGATATCAAGGGCGCAAATATATTGACAACCAAAGAGGGTCTTGTGAAACTTGCTGACTTTGGTGTTGCAACAAAATTAACTGAGGCAGATGTTAATACGCATTCCGTTGTTGGGACACCATATTGGATGGCCCCTGAGGTAATCGAAATGTCTGGGGTTTGTGCTGCTTCGGACATTTGGAGTGTTGGTTGCACTGTGATTGAGCTTCTTACATGTGTACCTCCTTACTATGATCTCCAGCCTATGCCAGCTCTATTCCGTATTGTTCAGGATGATCATCCTCCAATACCAGATGGCTTATCTACTGACATTACAGATTTTCTGCGGCAGTGTTTTAAGAAGGATGCTAGGCAGAGGCCTGATGCAAAGACACTGCTTTCACATCCTTGGATACGGAACTGTAGGCGTGCTTTGCAGTCCTCTCTTCGTCATAGTGGAACATTGAGAAATATACAGGAAGATGCTTCAGTTGATGCAGAGATTTCCAATGGAGATGATCAAAGTATTGGTGAAAGCCCTTCTGATGAGAAAGCAGAAGTAATTGCCTCTGAATTTGAAAATGATTCCAGAAAAGAGTGTTTACCAACTGAGGTTGTTGATACCGGCAAATCTTATACGGATTCCAATGGAGATCTTATTGAGGATGAAGTTGATAATCCAGAAGAGTATGTTCAATCAGATCAAGTACCCACATTGGCCATTCACGAAAAATCATCTCTACCAACTACTTCTGGTATATTGCCTGCTAATAAGGATGTGGCTCCCCCTAGTCCAACAGATTCTAACGAGGTACTAGATATGGGTGATCAGGATGAAGCACTAATGAATGGTAAGGTGGGATCTCCTAAGTCAAGAAAGAACAATGTTTTATATAAAAAGAGTGAAGGGAAAGGAAGTTCTACTCAACTTGACAACAGATTATTTGGTTTTGTACCAAGAAGTCAGGAGAATAGTTCTCGAAAGGCTGCAAAGGCACCAGTCATTTCGGGCGGAAATGAGCTAAGTAAATTTAGTGACACGCCAGGAGATGCTTCTTTGGAAGATTTATTTCATCCACTGCATAAGAATCCTGAGGATCAGGCAGCTGAAGCTTCAACATCTGCATCCTCATCACATGTTGTACAAGGCAATGCATTCATAAATGATGCTGGAAAAAATGACCTGGCAACAAAGTTGAGGGCTACAATTGCTCAGAAACAAATGGAGAATGAGATTGGGCAAACAAATGGAGATCTCTTCAGTTTAATGTTGGATGTTCTGAAGGAGGACGTGATGGATATTGATGGTTTGGTTTTTGATGACAAAATGCCTGGAGAGAACCTTTTTCCCCTACAGGCTGTTGAGTTTAGCAGATTAGTTGGGTCATTAAGACCACAGGAACCAGAAGATGTGATCGTGTCTGCCTGTTTGAAGCTTATATCCATTTTTCACCAACGCCCTGAGCAGAAAGGTGTGTTTGTTACTCAGCATGGTTTACTCCCCCTCATGGAACTACTTGAAGTTTCTAGAACTCGTGTTATATGTTCAGTGCTTCAAATTGTAAATCAGATAATCAAGGATAATACCGATTTCCAGGAAAATGCTTGTCTTGTTGGCCTGATCCCTGTTGTTATGAGCTTTGCAGTACCTGATCATCCCCGGGAAGTTCGCATGGAAGCCGCTTATTTCTCGCAGCAGCTTTGTCAGTCTAGCTCCTTGACATTGCAAATGTTCATTGCTTGTGGTGGAATACCTGTTTTAGTGGGCTTTCTGGAGGCTGATTATGTGAGGTACAGGGAAATGGTTCATCTAGCTATTGATGGCATGTGGCAGGTCTTCAAGCTTCAGCGATCAACACCTAGAAATGATTTCTGTCGCATTGCTGCAAAGAATGGAATACTTCCTAGGCTTATAAACACTCTTTATAGTTTGAATGAGGCTGCTCGTCTAGCTTCCATAGCTGGTGGTAGTGGATTTACAATAGAAGGTTTGGCTCCGCGACCACGTTCTGGTTCACTGGATCCCAGCTCTCCTATTTTTATTCAGGGTGAGATATCACTTACTGGAATCGATCATCCTGATCTCCTTAAGGTTAGGCATGGGCTAATTGATCATTCCTTGTCAACTGCAACCCAAGAACCTTCACGTGTTTCAGCATCACATCCCCAAAGGTCAGATGCTAACCAACCAGATTCCCGATACTTCTCTCTGGATACTGACAGGCCTGCAATGGAAGCTTCAGTTGCTTCTAAATTACAAGACCTTGCATTTTCAGAAAAAGTTGCAAATATGCAAACAAAGGAATCTTCTGGAACTATTTTGAAAGAGCGAGAAAACTTGGACCGCTGGAAAATTGATCCACAACGAGTCCCTAATTCGGCTAATAGGACATCAGTAGACAGACCTTCAAAATTGGTGGAAGGTGTGTCAAATGGGTTTCCTAGTACAATAGGGACCCAGCAAGAGCAAGTTCGACCTCTTCTTAGCTTGTTGGATAAGGAGCCCCCTTCCCGGCATTTTTCTGGTCAGCTAGAGTATGTACGGCACCTCTCTGGGTTGGAGAGACATGAAAGCATACTGCCTCTACTACATGCAACCAATGAGAAGAAAACAAATGGTGAACTAGATTTTCTGATGGCAGAATTTGCAGAGGTTTCTGGTCGTGGAAGAGAAAATGGAAATCTGGATTCTGCACCTAGAATTTCAAATAAAACTGTAAATAAGAAGATTCCATTGGCATCTAATGAGGGTGCTGCTTCTACATCTGGGATTGCTTCTCAGACAGCATCAGGTGTACTGTCTGGTTCTGGTGTTTTAAATGCTAGGCCAGGAAGTGCAACGTCATCTGGGTTGCTTTCCCATATGGTATCATCACTCAATGCTGATGTTGCTAAGGAATATCTAGAAAAGGTTGCAGACCTTCTGCTGGAGTTTGCCCAAGCAGATACGACAGTAAAATCCTACATGTGTAGCCAAAGCTTGCTTAGCCGTCTTTTTCAGATGTTCAATCGGATAGAGCCGCCTATTCTTTTGAAGATACTAAAGTGTATCAATCATTTGTCAACCGACCCAAATTGCTTAGAAAATCTTCAGCGTGCCGATGCAATCAAATACTTGATCCCAAACCTTGAACTCAAAGAAGGGCCTCTTGTATTTCAAATACATTATGAGGTCCTCTATGCATTATTCAACCTCTGCAAGATAAATAAGAGGAGGCAAGAACAAGCAGCTGAAAATGGAATCATTCCACACTTGATGCATTTTATAATGTCAGATTCTCCCTTGAAACAACATGCATTGCCTCTACTGTGCGATATGGCCCATGCATCACGTAACTCAAGGGAGCAATTAAGGGCCCATGATGGGTTGGATGTGTACTTAAGCCTACTTGAGGATGAGCTTTGGTCTGTGACAGCATTAGATTCTATTGCTGTGTGCTTGGCCCATGACAATGACAACCGGAAAGTAGAACAGGCGTTGCTGAAAAAGGATGCAATTCAGAAATTGGTCAAATTCTTCCAGTGCTGTCCTGAACAACATTTTGTGCACATATTGGAGCCCTTCTTGAAGATTATCACGAAATCATCCCGGATAAATACAACACTAGCTATTAATGGGTTGACACCCTTGCTTATTGCAAGGCTTGACCATCAGGATGCTATAGCTCGTCTTAATCTGCTCAAACTAATAAAGTCTGTTTATGAGCACCATCCACGGCCAAAGCAACTGATCGTGGAGAATGATCTGCCTCAGAAGCTTCAGAATCTGATTGAGGAGCGCAGAGATGGGCAACGTTCTGGAGGCCAAGTGTTGGTTAAACAGATGGCTACTTCTCTCCTTAAAGCACTCCATATCAACACCGTTTTGTAA 4278 0.424 MSRQVATSHFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDHPPIPDGLSTDITDFLRQCFKKDARQRPDAKTLLSHPWIRNCRRALQSSLRHSGTLRNIQEDASVDAEISNGDDQSIGESPSDEKAEVIASEFENDSRKECLPTEVVDTGKSYTDSNGDLIEDEVDNPEEYVQSDQVPTLAIHEKSSLPTTSGILPANKDVAPPSPTDSNEVLDMGDQDEALMNGKVGSPKSRKNNVLYKKSEGKGSSTQLDNRLFGFVPRSQENSSRKAAKAPVISGGNELSKFSDTPGDASLEDLFHPLHKNPEDQAAEASTSASSSHVVQGNAFINDAGKNDLATKLRATIAQKQMENEIGQTNGDLFSLMLDVLKEDVMDIDGLVFDDKMPGENLFPLQAVEFSRLVGSLRPQEPEDVIVSACLKLISIFHQRPEQKGVFVTQHGLLPLMELLEVSRTRVICSVLQIVNQIIKDNTDFQENACLVGLIPVVMSFAVPDHPREVRMEAAYFSQQLCQSSSLTLQMFIACGGIPVLVGFLEADYVRYREMVHLAIDGMWQVFKLQRSTPRNDFCRIAAKNGILPRLINTLYSLNEAARLASIAGGSGFTIEGLAPRPRSGSLDPSSPIFIQGEISLTGIDHPDLLKVRHGLIDHSLSTATQEPSRVSASHPQRSDANQPDSRYFSLDTDRPAMEASVASKLQDLAFSEKVANMQTKESSGTILKERENLDRWKIDPQRVPNSANRTSVDRPSKLVEGVSNGFPSTIGTQQEQVRPLLSLLDKEPPSRHFSGQLEYVRHLSGLERHESILPLLHATNEKKTNGELDFLMAEFAEVSGRGRENGNLDSAPRISNKTVNKKIPLASNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNADVAKEYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRIEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGPLVFQIHYEVLYALFNLCKINKRRQEQAAENGIIPHLMHFIMSDSPLKQHALPLLCDMAHASRNSREQLRAHDGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAIQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLKLIKSVYEHHPRPKQLIVENDLPQKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL* 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0217 1425 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Vvi1g0217 1425 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Vvi1g0217 1425 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Vvi1g0217 1425 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Vvi1g0217 1425 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 736 - -
Vvi1g0217 1425 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Vvi1g0217 1425 MobiDBLite consensus disorder prediction 845 873 - -
Vvi1g0217 1425 FunFam MAP3K epsilon protein kinase 1-like 1074 1420 - -
Vvi1g0217 1425 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0217 1425 Gene3D - 584 792 IPR011989 -
Vvi1g0217 1425 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vvi1g0217 1425 CDD STKc_Cdc7_like 19 274 - -
Vvi1g0217 1425 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0217 1425 MobiDBLite consensus disorder prediction 296 318 - -
Vvi1g0217 1425 Gene3D - 1075 1422 IPR011989 -
Vvi1g0217 1425 SUPERFAMILY ARM repeat 1086 1399 IPR016024 -
Vvi1g0217 1425 SMART arm_5 622 662 IPR000225 GO:0005515
Vvi1g0217 1425 SMART arm_5 1159 1203 IPR000225 GO:0005515
Vvi1g0217 1425 SMART arm_5 707 750 IPR000225 GO:0005515
Vvi1g0217 1425 SMART arm_5 1205 1244 IPR000225 GO:0005515
Vvi1g0217 1425 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Vvi1g0217 1425 MobiDBLite consensus disorder prediction 384 493 - -
Vvi1g0217 1425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vvi1g0217 1425 MobiDBLite consensus disorder prediction 436 465 - -
Vvi1g0217 1425 FunFam MAP3K epsilon protein kinase 1 584 792 - -
Vvi1g0217 1425 MobiDBLite consensus disorder prediction 845 871 - -
Vvi1g0217 1425 Gene3D Transferase(Phosphotransferase) domain 1 17 311 - -
Vvi1g0217 1425 MobiDBLite consensus disorder prediction 922 953 - -
Vvi1g0217 1425 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0217 1425 SUPERFAMILY ARM repeat 593 787 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0217 Vvi-Chr1 2007333 2038877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0217 1 1425 MAP Kinase Kinase Kinase AT3G13530 73.394 0.0 2058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vvi1g0217 Pkinase 1.8e-71 CL0016