Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0212 ATGTTTTCCCGGTCTTTGTGCTCTAGAACTTTAGCAGGAAACTGTTCATTATGTGATAATTTGATCAGAAGATATCTTTCAGATTCATTATTGACTCAGGGTGTTGCCGCTGGAAATAGTAATGTTAGGTTGCATGGGAGTTTTAATGTATCTTTGCGGAGTAGTCAGTTAAGATTCTACAGTTCTGAAGGCGATGGAAGGAATGCCAGTGAGGATGAACATATACCTGTGAAGGATGGGGCTAACTTGGATAAGGGGAAGACTAAGCGGAAGGTTAGAGAAGCTGTGAGGCACTGTGATGAGCACATTCGGCTTGGGGAACAAGATCAAAAGGAATGGCTCAATAATGAGAAACTAGCCATTGAGAGTAGAAAGAAGGAATCACCATTCCTATCTAGACGGGAAAAGTTAAAAAATGAGTTCTTGCGGAGAGTTGTTCCATGGGAGAAAATAACTGTTTCATGGGAAACATTTCCTTATCACATTCCGGACCATACCAAAAATCTTTTGGTGGAATGTGCTGCTTCCCATCTGAAACATAAGAAGTTCACTGTGTCTTATGGTGCTCGTTTGACCTCTTCAAGTGGGAGGATACTGCTTCAAAGTGTTCCAGGTACTGAGCTATACCGAGAAAGATTAGTCAGAGCACTTGCTAGAGATTTACAAGTTCCCTTACTGGTTCTGGACAGCAGTATTCTTGCTTCTTATGATTTTGCTGAAGGTTGCTCATCAGAATGTGAATCAGATGATGATAACTTGGAATCGTGTGAAGACTGCATTTCAGAGTCTGAGATTGAGGACGAGAGTGATTCAAATGATGAGGAAGAATGGACAAGCAGTGGTGAGGTGAAGTCAGATGCTAGTGATAATGATGATGTGCAGGCTTCTGCTGAAGCTCTAAAGAAGCTTGTTCCCCACAAGCTCAAAAAATTTGAACAGAGAGTTGCTGCAGAATTGGAAATTTCCTCCGAATCCTCAACTTCTGAGGCTGTTGAATCTTCTGATAAACCTAAATGGTCACTAAAGAAAGGGGATCGAGTAAAATATGTTGGGCCTTCTATTGATATTGAAGCTGATAACAGGGTCATTTTGGGGAAGATACCAACATGTGATGGTCCAACAAATGCTTATACCATTTTCCGTGGCAGGCCTTTATCAAGTGGTCAACGTGGAGAGGTATATGAGGTGAATGGGGATCGAGTTGCTGTTATCTTGGATAGAAGCGAAAAAAAACCAAATGAAGGAGAGGAAGATGAAAAGCTTATAGACCAAGCTGAAAAACCCTCAGTTTATTGGATGCAAGTTAAGGACATTGAGTATGATCTTGATACTGAGGGAGAAGATCGGTACATTGCAATGGAGGCTTTGTGTGAGGTTTTGCATTCTACACAGCCTCTTATTGTCTATTTTCCAGACTCTTCTCAATGGTTGTTGAGGGCCGTCTCCAAGCCAAATCAGAAAGAGTTTGTTTGTAGGGTACAGGAAATGTTTGACCAATTATCAGGACCTGTTGTTTTGATATGCGGGCAGAACAAAACTGAAGCAGGGTCAAAGGAGAGGGAAAAATTTACGATGCTAGTCCCGGGTTTGGGTCGCCTTGCTAAGCTGCCTGTCCCATTGAAGCAACTTACAGAGGGACTAAAAGCAACAAAGACATCAGAAAACAATGAGATACTTAAGCTTTTCAGTAATGTTATATGTATCGATACCCCAAAGGATGAAGAACTTCTTAGAACATTCAATAAGCAGGTTGAAGAAGACCGAAGGATCATTATCTCCCGGAGCAATTTAAATGAATTGCACAAGGTTCTGGAGGAACATCAGCTGTCATGCATGGATCTGTTGCATGTAAATACTGATGGTGTGATATTGACTAAGCAAAAAGCTGAAAAGATTGTTGGCTGGGCTAAAAATCATTACTTGTCATCTTGCATGCTTCCTTCCATAAAGGGGGAAAGATTATCTGTACCTCGTGAAAGCCTTGAAATTGCAGTTTTGAGATTAAAGGTGCAGGAAGCAATATCCAGAAAGCCGTCACACAGTTTGAAGAATCTTGCCAAGGATGAATATGAGAGCAACTTTGTTTCGGCGGTTGTTCCTCCCGGTGAAATTGGTGTTAAGTTTGATGATATTGGTGCTCTTGAAGATGTGAAGAAGGCATTAAATGAACTTGTCATTCTTCCAATGAGGAGACCAGAGCTTTTCTCTCATGGAAATCTGTTGCGGCCTTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTTGCCAAGGCTCTTGCTACAGAAGCGGGGGCAAACTTTATCAGCGTAACTGGTTCAAATCTTACATCGAAGTGGTTTGGAGATGCTGAAAAGCTTACCAAAGCCTTGTTCTCCTTTGCTGGCAAGCTGGCACCTGTTATCATATTTGTTGATGAGGTTGACAGTTTGCTTGGTGCACGTGGTGGTGCTTTTGAGCATGAGGCAACTAGGAAAATGCGCAATGAGTTTATGGCAGCTTGGGATGGATTGAGGTCAAAAGACAACCAGAGAATCATCATCCTTGGTGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTCGTCGTCTGCCTAGAAGGATATATGTGGACCTACCAGATGCTGAGAATCGTATGAAGATTCTAAGAATATTTCTTGCATCAGAAAATATTGAACCTGGTTTCCAGTTTGACAAACTTGCAAATGCCACTGAAGGATATTCAGGGAGTGATCTGAAGAACCTCTGCGTTGCTGCTGCATACAGGCCTGTCCAAGAACTTCTGGAGGAAGAACAGAAGGGAGGCGGAGACATTCTTCCTCCAGTATTGAGGTCTCTCACTTTGGATGATTTTATCAAGTCAAAAGCGAAGGTGGGGCCATCTGTTGCATTTGATGCGGCAAGCATGAATGAACTGAGGAAATGGAATGAACAGTATGGAGAAGGTGGAAGCAGGAGGAAATCGCTGTTTGGTTTTGGGAACTAA 3003 0.4232 MFSRSLCSRTLAGNCSLCDNLIRRYLSDSLLTQGVAAGNSNVRLHGSFNVSLRSSQLRFYSSEGDGRNASEDEHIPVKDGANLDKGKTKRKVREAVRHCDEHIRLGEQDQKEWLNNEKLAIESRKKESPFLSRREKLKNEFLRRVVPWEKITVSWETFPYHIPDHTKNLLVECAASHLKHKKFTVSYGARLTSSSGRILLQSVPGTELYRERLVRALARDLQVPLLVLDSSILASYDFAEGCSSECESDDDNLESCEDCISESEIEDESDSNDEEEWTSSGEVKSDASDNDDVQASAEALKKLVPHKLKKFEQRVAAELEISSESSTSEAVESSDKPKWSLKKGDRVKYVGPSIDIEADNRVILGKIPTCDGPTNAYTIFRGRPLSSGQRGEVYEVNGDRVAVILDRSEKKPNEGEEDEKLIDQAEKPSVYWMQVKDIEYDLDTEGEDRYIAMEALCEVLHSTQPLIVYFPDSSQWLLRAVSKPNQKEFVCRVQEMFDQLSGPVVLICGQNKTEAGSKEREKFTMLVPGLGRLAKLPVPLKQLTEGLKATKTSENNEILKLFSNVICIDTPKDEELLRTFNKQVEEDRRIIISRSNLNELHKVLEEHQLSCMDLLHVNTDGVILTKQKAEKIVGWAKNHYLSSCMLPSIKGERLSVPRESLEIAVLRLKVQEAISRKPSHSLKNLAKDEYESNFVSAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISVTGSNLTSKWFGDAEKLTKALFSFAGKLAPVIIFVDEVDSLLGARGGAFEHEATRKMRNEFMAAWDGLRSKDNQRIIILGATNRPFDLDEAVIRRLPRRIYVDLPDAENRMKILRIFLASENIEPGFQFDKLANATEGYSGSDLKNLCVAAAYRPVQELLEEEQKGGGDILPPVLRSLTLDDFIKSKAKVGPSVAFDAASMNELRKWNEQYGEGGSRRKSLFGFGN* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0212 1000 ProSitePatterns AAA-protein family signature. 850 869 IPR003960 GO:0005524|GO:0016887
Vvi1g0212 1000 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 705 881 - -
Vvi1g0212 1000 MobiDBLite consensus disorder prediction 262 276 - -
Vvi1g0212 1000 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 135 993 - -
Vvi1g0212 1000 MobiDBLite consensus disorder prediction 277 291 - -
Vvi1g0212 1000 Pfam AAA+ lid domain 902 935 IPR041569 -
Vvi1g0212 1000 MobiDBLite consensus disorder prediction 63 89 - -
Vvi1g0212 1000 Pfam ATPase family associated with various cellular activities (AAA) 747 877 IPR003959 GO:0005524|GO:0016887
Vvi1g0212 1000 Gene3D - 879 964 - -
Vvi1g0212 1000 MobiDBLite consensus disorder prediction 262 292 - -
Vvi1g0212 1000 SMART AAA_5 743 880 IPR003593 GO:0016887
Vvi1g0212 1000 MobiDBLite consensus disorder prediction 65 89 - -
Vvi1g0212 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 927 IPR027417 -
Vvi1g0212 1000 Gene3D - 706 982 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0212 Vvi-Chr1 1932644 1958275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0212 706 938 Calmodulin-binding Proteins AT3G56690 37.712 2.14e-38 153