Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0208 ATGGGAAAGTCCAGCAAGAAATCGACCCCCAAAGTTGATGCAACTCCCGTTGTCACTCCACCCTCCAAACCTACCAAAAAAGGTAAGAGGCAAGCTGAAGATTCGGTAGAGAAGGTGGTGAGCGCGAAGAAGCAGAAAAAAGATAATGGGGTAGAGCAGGTCGTACAGAAGCAGAAGGTCGAAGTGAAAAAACAACAGAAGGTGGAGACGAAGAAGAAGAAGAAAGAGGAGACTAGTAGCTCAGAGGACTTGACTTCATCTGATTCTGATGAAGAGCCAAAGGCTACAACAGCCTCTAAGAAGGGAGCAATTCCGGCAAAACCACCTGCTAAAGCAACTGTTGAGGAATCTTCATCGGATGAGGAATCTTCATCTGATGAGGAGCCTGATTCTAAAGTTGCTGTTCCTTCAAAGAAAAAACCTATATCTGCTTCTAAGAATGGCACTGCCGCTGGCCCAGTGGCTGCTGCAAAGAAGAAAGAAGCTAATAAGGTGAGCTCCCAACCAAAGAAATTACCAGCCACTGCCAAGGCTGCTAAGAATGGCTCTGTCGTGGCTCCCAAGAAGAAAGAAGAGTCAAGTGATAGTTCTGATTCAGATAGTAGTTCAGATGAGGAGGATGAGAAGGCTTCAAAGGTTGCTTCTCAAGCTAAGAAGTTGCCACCTTCCAGCCAAAAGAATGTTCCAGTGGCGGCTCCTAAGAAAGCTGAATCAAGTGATAGCTCTGATGAGAGTGATTCTGATGAAGAGGAACCAGCTGCTGCAAAGAATGTAGCTGCTGCAAAGAATGTAATTGCTGCAGCACCTAAAAAGAAAGTACAGTCTAGTGATAGTTCTTCTGAGACCTCTTCAGAGGAAGAAGAGGAACCACAGAAAAAACCAGCACCTAAAGAAGATAGCAGTGAAGATGATAGTTCTGATGAAAGTGATGAAGAGCCTCAAAAGAAAAAGTTGAAAGTTCCGGCTTCAGTTCCTTCTAATGCTGGAAAATCAAGCAGTAGCGAAGAGGAAAGCTCTGATTCAGAAGATGAGCCCTCAAAGATACCATTGCCAAAGAAGGCTACTCAAGTGTCAAAGAAAAGCAGCGGTCCTGAGGAGGATTCCTCAGAGGAGGATTCATCTGAGGAAGAAAGCGATGAGGAAGAGCCTTCCAAGACCCCAAAGAAGAATGGCACTGATGTGGAAATGGTAGATGCTGAAACACCTGCTAAGCAGACTGATTCAAAATCTGGGAAGAAAGCTCCCAAAACCCCTGCCACTCCTCAAGTGGAGAGCACTGGAAGCAAGACACTGTTTGTTGGCAATCTATCTTTTAGTGTTCAAAAAGAGGATGTGGAGCATTTCTTTAAAGATGCTGGTGAAGTTGTTGATGTCCGTTTCTCCTCAGATGCAGACGGGAGGTTCAAGGGCTTTGGTCATGTTGAGTTTGCTACTCCAGAAGCAGCACAGAAGGCTCTCAAAATGAATGGTAAAGACTTGTTGGGTCGTGCTGTCAGACTTGATTTGGCCCGTGAAAGGGGCGCATATACTCCATATAGCGGAAAAGAAAGCAATTCATTCCAAAAGGGAGGGAGTCAGGCACAGACGATATTTGTTCGGGGCTTTGATAAAAGTGGCGATGAGGACCAGGTTAGGAGCACCCTGGAAGAGTATTTTGGGTCTTGTGGGGATATTTCAAGGATTTCAATCCCTAAAGATTATGAATCTGGTTCTGTTAAGGGGATTGCTTACATGGACTTCACAGATGGTGACAGCTTCAACAAAGCTCTTGAACTCAATGGAACAGAACTGGGAGGTTATACCTTGAATGTTGAAGAGGCAAAGCCCAGAGGTGATAGCCGTGATGGTGGTGGCAGAAGTGGTGGAAGGAGTGGTGGTAGAGATGGTGGTCGGTTTGGAGGTAGACGTGGAGGTGGACGAGGTGGTGGTGGGGACCGTTTTGGTGGTGGTGGTGGGGGCCGTTTTAGTGGTGGTGGGGGCCGTTTTGGCGGTGGTGGCAGAGGACGTGGAGGTTTTAATAAACCAAACATGGGTGCTGCTGGCACAGGTAAGAAGACAACTTTCAATGATGAGTAA 2076 0.4644 MGKSSKKSTPKVDATPVVTPPSKPTKKGKRQAEDSVEKVVSAKKQKKDNGVEQVVQKQKVEVKKQQKVETKKKKKEETSSSEDLTSSDSDEEPKATTASKKGAIPAKPPAKATVEESSSDEESSSDEEPDSKVAVPSKKKPISASKNGTAAGPVAAAKKKEANKVSSQPKKLPATAKAAKNGSVVAPKKKEESSDSSDSDSSSDEEDEKASKVASQAKKLPPSSQKNVPVAAPKKAESSDSSDESDSDEEEPAAAKNVAAAKNVIAAAPKKKVQSSDSSSETSSEEEEEPQKKPAPKEDSSEDDSSDESDEEPQKKKLKVPASVPSNAGKSSSSEEESSDSEDEPSKIPLPKKATQVSKKSSGPEEDSSEEDSSEEESDEEEPSKTPKKNGTDVEMVDAETPAKQTDSKSGKKAPKTPATPQVESTGSKTLFVGNLSFSVQKEDVEHFFKDAGEVVDVRFSSDADGRFKGFGHVEFATPEAAQKALKMNGKDLLGRAVRLDLARERGAYTPYSGKESNSFQKGGSQAQTIFVRGFDKSGDEDQVRSTLEEYFGSCGDISRISIPKDYESGSVKGIAYMDFTDGDSFNKALELNGTELGGYTLNVEEAKPRGDSRDGGGRSGGRSGGRDGGRFGGRRGGGRGGGGDRFGGGGGGRFSGGGGRFGGGGRGRGGFNKPNMGAAGTGKKTTFNDE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0208 691 MobiDBLite consensus disorder prediction 26 97 - -
Vvi1g0208 691 CDD RRM1_NUCLs 430 506 IPR034349 -
Vvi1g0208 691 FunFam Nucleolin 2 403 513 - -
Vvi1g0208 691 SMART rrm1_1 430 501 IPR000504 GO:0003723
Vvi1g0208 691 SMART rrm1_1 529 605 IPR000504 GO:0003723
Vvi1g0208 691 MobiDBLite consensus disorder prediction 381 411 - -
Vvi1g0208 691 CDD RRM2_NUCLs 529 607 IPR034350 -
Vvi1g0208 691 MobiDBLite consensus disorder prediction 412 429 - -
Vvi1g0208 691 Gene3D - 516 647 IPR012677 -
Vvi1g0208 691 SUPERFAMILY RNA-binding domain, RBD 524 641 IPR035979 GO:0003676
Vvi1g0208 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 505 IPR000504 GO:0003723
Vvi1g0208 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 431 498 IPR000504 GO:0003723
Vvi1g0208 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 530 602 IPR000504 GO:0003723
Vvi1g0208 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 528 609 IPR000504 GO:0003723
Vvi1g0208 691 MobiDBLite consensus disorder prediction 601 691 - -
Vvi1g0208 691 MobiDBLite consensus disorder prediction 1 429 - -
Vvi1g0208 691 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 547 659 - -
Vvi1g0208 691 SUPERFAMILY RNA-binding domain, RBD 419 520 IPR035979 GO:0003676
Vvi1g0208 691 MobiDBLite consensus disorder prediction 285 300 - -
Vvi1g0208 691 Gene3D - 351 515 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0208 Vvi-Chr1 1891659 1898827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0208 414 597 Eukaryotic Initiation Factors Gene Family AT4G34110 29.947 1.72e-12 68.6