Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0207 ATGGAGAGGAGCTTCACTCATTGCTTGGTTCTAGCCATTTTCTTGGGACTGTTTGCCCTGGAGGCAACAGCTGGGGCAAGCTTCAACTATGGTGATGCCATGGAGAAGAGCTTGATGTTTTTTGAGGCACAGAGGTCAGGGAAGCTGCCGGTGAACCAGAGAGTCAAGTGGCGGGGGGATTCGGGACTCCGTGATGGGCTTCTTCAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCCGGAGACCATGTGAAGTTTGGGCTGCCAATGGCTTTTACAGTGACCATGCTTTCATGGGGAGCCATCGATTACAGGAAAGAGATCACAGGCTTGAACCAGATGGGTGACACACTGGCTGCTATCAAATGGGGGACTGATTACTTCATCAAGGCACATACTGAGCCGGATGTTCTCTGGGGACAGGTGGGGGATGGAGACTCTGATCACTACTGTTGGGAGCGCGCAGAGGACATGACGACACCTAGAAATGCTTACAAACTTGACCCCAATCATCCAGGCTCTGATCTTGCTGGTGAAACTGCAGCTGCCATGGCTGCAGCCTCCATGGCTTTCAAGCTTTATAACTCTTCCTACTCCAGTCTGCTCTTAGCTCATGGAAAGCAGCTTTTCTCATTTGCGGATAGATTCAGGGGTCAGTATGATGATTCCATCCAGTGTGCTAGGCAGTACTACACTTCATCAGGTTACTCGGATGAGTTACTGTGGGCTGCTGCTTGGCTTTTCCGGGCTACTGGCGATGAATACTATTTGAAATATGTAGTGGATAATGCAGTCTCTATGGGAGGAACTGGATGGGCAGTAAAAGAGTTTTCTTGGGACAACAAATACGCTGGTGTGCAGATTCTTCTTTCAAAGGTATTGATGGAGGGACGCGGTGGGGCATACGCTTCCACACTAAAGAAGTACCAGGCCAAGGCGGATTTCTTTGCATGTGCTTGTCTGCAGAAGAATGATGGCTACAATGTTCCCTTGACTCCAGGTGGCTTAGTGTACTTGCATGAATGGAACAACATGCAGTATGCCTCATCTGCTGCATTCCTTCTTGCTGTCTACTCTGATTACCTCTCTGCTGAAAATGCTGTACTCAAATGCCCAGATGCCCAAGTCCAACCCTATGAGCTCCTCAATTTTGCAAAGTCACAGGCTGACTACATTCTAGGAAAAAATCCCAAGTCCATGAGCTACCTAGTTGGTTATGGACAGAAGTATCCAGTCCATGCTCACCACAGAGGTTCCTCCATTGCCTCTGTAGCTGTCCTCCACTCTACAGTAGGATGTGTGGAGGGATTTGAGTCATGGTATCATCGCCCTGAAGCAAACCCTAATGTTATTTATGGAGGTCTTGTGGGAGGACCTGACAAGAACGATGGATTCTCCGATGACCGGTCCAATTATGAGCAGACTGAGCCAACACTTTCAGGCGGTGCTCCTCTTGTAGGCCTCTTCTCCAAGCTGCAGAGCCTAATAGGAACTTCAGGTTCCCATTCTCAAAAATCACCTGCACCCCATCACCAAAACACACCAAGTAAGACCAGATTTCATCCTTGA 1569 0.4901 MERSFTHCLVLAIFLGLFALEATAGASFNYGDAMEKSLMFFEAQRSGKLPVNQRVKWRGDSGLRDGLLQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWGAIDYRKEITGLNQMGDTLAAIKWGTDYFIKAHTEPDVLWGQVGDGDSDHYCWERAEDMTTPRNAYKLDPNHPGSDLAGETAAAMAAASMAFKLYNSSYSSLLLAHGKQLFSFADRFRGQYDDSIQCARQYYTSSGYSDELLWAAAWLFRATGDEYYLKYVVDNAVSMGGTGWAVKEFSWDNKYAGVQILLSKVLMEGRGGAYASTLKKYQAKADFFACACLQKNDGYNVPLTPGGLVYLHEWNNMQYASSAAFLLAVYSDYLSAENAVLKCPDAQVQPYELLNFAKSQADYILGKNPKSMSYLVGYGQKYPVHAHHRGSSIASVAVLHSTVGCVEGFESWYHRPEANPNVIYGGLVGGPDKNDGFSDDRSNYEQTEPTLSGGAPLVGLFSKLQSLIGTSGSHSQKSPAPHHQNTPSKTRFHP* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0207 522 Gene3D - 26 496 IPR012341 GO:0005975
Vvi1g0207 522 MobiDBLite consensus disorder prediction 497 515 - -
Vvi1g0207 522 SUPERFAMILY Six-hairpin glycosidases 27 499 IPR008928 GO:0005975
Vvi1g0207 522 FunFam Endoglucanase 26 497 - -
Vvi1g0207 522 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Vvi1g0207 522 MobiDBLite consensus disorder prediction 462 483 - -
Vvi1g0207 522 MobiDBLite consensus disorder prediction 497 522 - -
Vvi1g0207 522 PANTHER ENDO-1,4-BETA-GLUCANASE 12 494 - -
Vvi1g0207 522 Pfam Glycosyl hydrolase family 9 30 488 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0207 Vvi-Chr1 1887739 1890374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0207 28 491 Glycoside Hydrolase AT1G48930 74.138 0.0 693