Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0203 ATGGAAAGAGAGGAACGTCGTGGCAGTTATTATAATTATGGTGATTACGATTATGAGAATGGGAATTGCGGTCGCTACCGCGTGGAGAGTGTGATGGTGGAGCGCGACAGGGACAATCAGAGTCCGGAGATGTCTTCTTCTTGGAAGATTTTGCCGGTTTCGTCGTGTCCTTCGTCTTCGTCTGGTCTCGGTGTGGGTTCGATCGAGCATCAGGTTTCGAAGATGGATACGCTTGCTGGGATTGCGATCAAGTACGGTGTGGAGGTGGCTGACATTAAAAGGATGAATGGCCTGGTCACCGATCTTCAAATGTTTGCTCTCAGGACACTACAAATACCATTACCGGGAAGGCATCCTCCATCTCCCTGTTTGCTAAATAGTTCTGAGACTCCCCAACGGAACTCTGACTGGACCCCAACAGACAGTGTGCACCGCAACCTTTTTGAAACATTCCAGTCACTGAGAGTGAAATCATCTTCCCAGCGGCCGGTATCCCCAGCTATGAGCACTTTACAAGGTTATTACAGGCTGAAGCCAGAAGATCAGCGAAATGCACCCAAAGGCTTTGAAATGGCAGTCTACAGAAAAGAAAGTGCCCATTATTTAGAAGATGGGCCATTCTCCAAACAGTCATCAATTTCTAACCCACTTCTGAGCCGTGTTCGGAAATGTAGAAGCTTAGCTAACGGTTTCATGCCAGAGAATGGCGAAGCAGCTGACGACATGACAATTTTAGAAGCAAAGGAAGGTGACTATAGATGGAATGAGAAATTGATCAGAAGGCGTCAGAAATCTGAAACAGACTTTTCTTGCAGCCCCGAAATGCCGTTGAAGGAGGATAACAGAAGTGGTGGTGGTGGTGGTGGATTTTCAGCAATAACAGGAAAGGGTTTGGCCCTGAGAACCAAAGCAGTGAATCGAACTGCAACTGATGCAGATGCAAGTTTAATGAACCCTATTCCGGTAGGTCTGGGGGATTCTATTGTGACAGATAGTTTTGCTGGAGTAAGGAAGTCATCAAGCACATCAAATTTGCAGGATCAGGACAGTGCTATCTTTCCGTCCATCTGGCCAACATCAATGTGGAATTTGAAGCCTGATCTACAAGCCCTTTCAACTGCAGCCATTACAAGACCAATCTTTGATGGCTTGCCTAAACCAATAACTGGACGAAAAAACAAAGCCGCTCTTGATTAG 1197 0.4645 MEREERRGSYYNYGDYDYENGNCGRYRVESVMVERDRDNQSPEMSSSWKILPVSSCPSSSSGLGVGSIEHQVSKMDTLAGIAIKYGVEVADIKRMNGLVTDLQMFALRTLQIPLPGRHPPSPCLLNSSETPQRNSDWTPTDSVHRNLFETFQSLRVKSSSQRPVSPAMSTLQGYYRLKPEDQRNAPKGFEMAVYRKESAHYLEDGPFSKQSSISNPLLSRVRKCRSLANGFMPENGEAADDMTILEAKEGDYRWNEKLIRRRQKSETDFSCSPEMPLKEDNRSGGGGGGFSAITGKGLALRTKAVNRTATDADASLMNPIPVGLGDSIVTDSFAGVRKSSSTSNLQDQDSAIFPSIWPTSMWNLKPDLQALSTAAITRPIFDGLPKPITGRKNKAALD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0203 398 MobiDBLite consensus disorder prediction 265 289 - -
Vvi1g0203 398 Gene3D LysM domain 54 119 IPR036779 -
Vvi1g0203 398 SUPERFAMILY LysM domain 69 113 IPR036779 -
Vvi1g0203 398 ProSiteProfiles LysM domain profile. 68 112 IPR018392 -
Vvi1g0203 398 Pfam LysM domain 70 113 IPR018392 -
Vvi1g0203 398 CDD LysM 68 112 IPR018392 -
Vvi1g0203 398 SMART LysM_2 69 113 IPR018392 -
Vvi1g0203 398 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 47 314 IPR045030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0203 Vvi-Chr1 1819958 1823464 Dispersed