Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0202 ATGGCTCCGGGGCGTAAAAGGGGAGCGAACAAAGCCAAGGCTAAGAGTGAGTTGCGCTTGGGCGATCTCGTTCTGGCAAAGGTCAAGGGCTTCCCAGCGTGGCCCGCCAAGATTGGCAAGCCTGAAGATTGGGATCGAACTCCTGATCCTAAGAAATATTTTGTTCAATTCTTTGGAACTGAGGAAATAGCTTTTGTTGCCCCTGGAGATATTGAGGCATTTACTAGTGAGGTAAAAAATAAATTGTCGGCTAGGTGTCGAGGTAAAACAGTTAAATTCTTCGCCCAAGCAGTGAAGGAAATATGTGATGCTTATGAAGAGTTGCAGCAAAAAAACACAAGTGGTTCGAGAGATGATAGAGACAGGACTGCTCCTGAGAGTGAGGCTCCATCTGTTGATGGGGTGGGGGATGACAGGGTAGAGGATGACTTGAAAGATGGGATTGGTACTGTTCGACTGAATGGGGAAACAGTGATTGAAGGTTTAGGTGATTGTGGCTCTGGATTGGAGCACTGCTTTCATAAACAGGGTGAGCCTGATGATCAAGATGTAAAACCTGCTACTTCAGCTCATGCAAATGATAATTTATCTCCAGCTATATTTTCTGAGAAAAAGAATAAAGCATCAAATGGTGCACGAACACCAAAGGAGACAGAATCAACATCCAGTCCAGATAAACCTTTCTATGTTAAGGAAGAAATCCCTAATAATAGTAATGAAGAAGATATTATTTGCACTGGACGCACACAGGTTGCAACTCCTATGAAAGGTTCGAACTCTTGTCATGACAATGTTGAAGGTGGCTCCTCTAGTTGTTGGGATGATGGTCAAAAGGATGGTGTTCCATCTTTAATGGTGTCAACTCATGCTAAGAGCCCAGGTGGTGGACAAAGGGCATTAACAAATGGTCACAAGTCAAAGAAGGTGGTAATGGGGTCAAAGAGGAAACGTGAGGGCGTGGTTGAAGTACACAAAAACAAAAGCTCAGCAACCTCATTGAAGTATGAGAATGCTGGTGGTTCTGGTGATCTCCCTGAAGCTGGCGGGCATTTCAAAGATGGAACGCAAAGCAAAATTGCCTCTGGTGGCAGCATGAAAGAATCATCTCCGGATACTCTGAAATCTGATTCAGATATCACGAGTGGGAAGAGAGCACTGAAAGCTAAAAAGCAATTAAAGGTAACTGTTGACCGACAGAAGGATGCTATGGCCAATAATAAGGCACAGCCAAAGGGTGATCTTTCTGGTGGGAAAAAGAGGGCCCAGCTTGGACATGGAAAGCATAAGTTGGTTGATGATGAAATTTCACATTCTGTGAAAAGGTCAAAGTGTGTGGATCCGGTGGATGATGCCACCAAGAAATCACACATCAAGAGCATAAAGAATGATTCTCTGAGTTTTACTGTTGATGACAAGACTGTCAAGCATACAGAAATAAAAAAATCTGTTTCATGTCTGAAAGTAGACAACTCCATGGCATCAGAAGCAGAGACTGGTACTGTTGGTTCAGATGTTCCTGGTGATGAAGATGTTCTACCCCTTTCAAAACGCCGTCGCCGGGCGTTGGAAGCTATGTCTGATTCTGCTACTCTGACTCCTGAGGTCAAAATAGAGAAAAATTCTGTTGTGCTTAAAAATGATGCGTTGCATTCAAAAAGTGCCAAACCTCTGCATACCCAATTGAAGAGAAAAAGGAGAACAATTTGTCGATTTGAGGATGATGATGACGAAGAGCCCAAAACTCCAGTGCATGGGCCGTCCAGAAATGTTAACACCCCTTCACGTATCTCCAATTCTATCAAGGACCTTGATGCTCATCATGAAAGTTCTAATCATACTCAACTGAGTGTTAGAGATTCGGGGGGACATGAGGAAAGCCCATCGAAGGAATGTTCACCCAGACTACAGCAAACCGTAGAGAAGAGGCCTAAAAAGACAATGGCTGCACCTATCTCCCATAGTCCTCGGAAATTAGAATCTGAGAAGTTATCTTCAAAGGAGGCTAAACAAATCTTGAGTCCCCCTAAAAAGTCTCCTCGTTCAGCTTCTGCTACCAAACCGATGTTAGAACAACATAAAGCTGTCAAATCCGCAGTTAAGGTATCCAGTAGTGGTACTTTAGTAAAGGTTCAGTCTGGGTCTGCTAAGGCTTTGAGTCTGCTTGCTGATAGCTTAACTGCTCAAAATCAAGTGGCAATTCAGAGAAATAAGCCAATGTCTAGTGGTGAAAAATCAAAAGCTACTCCAAAAGCAAATTTGCGGCCAAATGAATCTGTTACTCTGACAGAAAATCTGATGGAAAATAATTCTTTGCTTGGAGAAAGACTAGAAGCTGGTAGGAATGATAAAACTAGTTCCTTGATTGATCCCAAGATAGCGGATTCTGTTCTGTCTATGAAGCACCTTATTGCAGCTGCTCAGGCCAAAAGGAGACAAGCACACTCACAAAATATTTCTCATGGAAATCCCAATACCGCTTTTGTATCCATTATTGATGTCCAGGGAGGGAGTCCTAGTCCTGTTTCTGCAGTTCCACCTTTTCCTTCTGGCACCAGCAGTGTAATGCAAGCAGATATGCAGGGATTTTACCCTCATACTACAATGGCTTCTCCATCTGCTCATAGTCGTCAGTTTGCATCACAAAGTCAACTCGATATTGAAGACTCTGAGGACAGAAGAGTCGGTTCAGGACCACGGGCAGCTGGTGGATCATTGAGTGGTGGTACTGAGGCAGCTGTTGCTCGTGATGCGTTTGAAGGAATGATAGAGACATTGTCAAGGACAAAAGAAAGTATTGGACGTGCAACCCGTCTTGCAATTGATTGTGCTAAGTATGGCATTGCCAATGAGGTTGTCGAACTTCTCATCCGAAAGTTGGAAAGTGAGCCTAGTTTTCATCGGAGGGTGGATCTGTTTTTTCTTGTGGATTCTATCACCCAATGCTCACATAGCCAAAAAGGAATTGCAGGAGCTTCTTATATTCCTACAGTCCAAGCTGCATTGCCGCGTCTTTTAGGCGCTGCTGCTCCATCTGGAGCTGGTGCTCGTGAAAATCGCCGTCAATGTCTGAAGGTTTTGCGGCTATGGCTTGAGAGAAAAATATTACCTGAATCTCTGCTTCGGCGCTACATGGATGACATTGGAGTTTCAAATGATGACACAACTTCTGGTTTTTTCCTTAGACGCCCTTCTCGATCTGAGCGGGCTGTAGATGATCCAATTAGAGAAATGGAAGGCATGTTTGTTGATGAGTATGGAAGCAATGCTACATTTCAGTTGCCTGGCCTTTTGTCTTCTCATGTATTTGAAGATGAAGATGAAGAAGATCTTCCAAGTGGTTTTTCTAAAGAAGCTGCTGGTGCATCTCCAGTAAAACCCACTCATGCTTCAGGAGATCCAGAAACTGTAACTCCAAATGACAGGCGCCACCACATCTTAGAGGATGTGGATGGTGAGCTTGAAATGGAAGATGTTTCCGGACACCTGAAGGATGAGAGACCTCTGTTCAGAAATGGTTCTTTCGAAATGGATTCACACCAGGACTCTGACAGAATTTCAGAACTAGCTTCAAACAATTCGAACGAGTTGCCCCCACTACCAGAGGGTTCTCCACCATTGCCTATTGATTCTCCTCCTCCACCCCCACCTTTGCCTCCTTCACCGCCCCCACCACCACCTCCTCCATTATCTCCATCACCTCCACCGCCTCCACCTCCTTTTCCGTCACAGCTGCCCCCACTTCCTCCACCACCTGCAGGGCCACCTCCACCTACAGGCCCTCCTCCACCTGCAGGGCCTCCTCCACCTACAGTCCATCCACCACCTATGGGGCCTCCACCATCTACGGGTCCTCCACCACCTATGGGGCCTCCACCATCTACGGGTCCTCCACCACCTATGGGGCCTCCACCTCCAATGGGCCCTCCACCTAGGGGTCCTCCACCGCTTATGGGTCCTCCACCACCGACGGGGCCTCCACCACCCACAGGCCCTCCACCACCAAGGGGTCCACCACCTATTGGGCCTCCACCACCTGCAGGGCCCCCACTACCTCCAGGCCCTCCACCCCCTCCTGGTCCCCCACCCCCTGCAAGCCAGCACCTACCTACAGGTCCTCCACCATCACTGCTTTCTCAACCACCACTACCTCCTACACCGCAACTGCCACCTCCACCACAGTTACCACCTCCACCGCAACTACAACCTCAACCGCAACTACCACCTCAACCTCCATTACTGCCACCTCAACCATCACTACAGTCTTCACCCCAGTTAGCATATCAACCACCTGTGCCTCATGAATATTGCAGTGTTGTAAGTGGAAATCAACTTGCCCCAATGGCTGGAAATACATCTCATGGAGGTCATATTGATACTGCTGTAAAAAGTGAAATGTTTCCACAGCAGTCACCTTGCTTTGCACCAACAGGTGTCTGCAATTCAAGAGAACCTTCTGGGTTTAATTCTTCAAGACCATTGGAATATGGGCATAATGACATGTATTTGAACCACCAAGCTTCTCAGCCTAGCCAGCAATTTCAGCCAGGTAATACACCTTTTTCACAAAGACCTTTACATCCAGCTCCATCTCCACAAACCCAACCTAGTCATTTTTCCTACACAAATCCCAACATCCAGCAACATCAGCAGCACCCATACTCCCACCCATACCCATTGCCACCGCCTCCTGATACCCGGAGGCGATTTGGTGCTGATGAACAGTGGAGGATGTCCTCAAGTGAACTTAACACAGATAGTCAGCGTGGTTTGTGGATGAGTGGAGGGAGAACTCCATCATGTTCAGGACCACCTTTTGTCCAGGAAGGTTATTTTCGGCCGCCCCTCGAAAGGCCACCTGCAAATAATATGGGTTTTCATTCTACCCCAAACGCGCTACCAGCTGGAGCTCCCATTCCAGTTCATGGTGTTTCTCAGATGTTGCCATGTAGACCAGATGTTTCTGCCCTTAATTGTTGGAGGCCAGCTTAG 4989 0.4676 MAPGRKRGANKAKAKSELRLGDLVLAKVKGFPAWPAKIGKPEDWDRTPDPKKYFVQFFGTEEIAFVAPGDIEAFTSEVKNKLSARCRGKTVKFFAQAVKEICDAYEELQQKNTSGSRDDRDRTAPESEAPSVDGVGDDRVEDDLKDGIGTVRLNGETVIEGLGDCGSGLEHCFHKQGEPDDQDVKPATSAHANDNLSPAIFSEKKNKASNGARTPKETESTSSPDKPFYVKEEIPNNSNEEDIICTGRTQVATPMKGSNSCHDNVEGGSSSCWDDGQKDGVPSLMVSTHAKSPGGGQRALTNGHKSKKVVMGSKRKREGVVEVHKNKSSATSLKYENAGGSGDLPEAGGHFKDGTQSKIASGGSMKESSPDTLKSDSDITSGKRALKAKKQLKVTVDRQKDAMANNKAQPKGDLSGGKKRAQLGHGKHKLVDDEISHSVKRSKCVDPVDDATKKSHIKSIKNDSLSFTVDDKTVKHTEIKKSVSCLKVDNSMASEAETGTVGSDVPGDEDVLPLSKRRRRALEAMSDSATLTPEVKIEKNSVVLKNDALHSKSAKPLHTQLKRKRRTICRFEDDDDEEPKTPVHGPSRNVNTPSRISNSIKDLDAHHESSNHTQLSVRDSGGHEESPSKECSPRLQQTVEKRPKKTMAAPISHSPRKLESEKLSSKEAKQILSPPKKSPRSASATKPMLEQHKAVKSAVKVSSSGTLVKVQSGSAKALSLLADSLTAQNQVAIQRNKPMSSGEKSKATPKANLRPNESVTLTENLMENNSLLGERLEAGRNDKTSSLIDPKIADSVLSMKHLIAAAQAKRRQAHSQNISHGNPNTAFVSIIDVQGGSPSPVSAVPPFPSGTSSVMQADMQGFYPHTTMASPSAHSRQFASQSQLDIEDSEDRRVGSGPRAAGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLESEPSFHRRVDLFFLVDSITQCSHSQKGIAGASYIPTVQAALPRLLGAAAPSGAGARENRRQCLKVLRLWLERKILPESLLRRYMDDIGVSNDDTTSGFFLRRPSRSERAVDDPIREMEGMFVDEYGSNATFQLPGLLSSHVFEDEDEEDLPSGFSKEAAGASPVKPTHASGDPETVTPNDRRHHILEDVDGELEMEDVSGHLKDERPLFRNGSFEMDSHQDSDRISELASNNSNELPPLPEGSPPLPIDSPPPPPPLPPSPPPPPPPPLSPSPPPPPPPFPSQLPPLPPPPAGPPPPTGPPPPAGPPPPTVHPPPMGPPPSTGPPPPMGPPPSTGPPPPMGPPPPMGPPPRGPPPLMGPPPPTGPPPPTGPPPPRGPPPIGPPPPAGPPLPPGPPPPPGPPPPASQHLPTGPPPSLLSQPPLPPTPQLPPPPQLPPPPQLQPQPQLPPQPPLLPPQPSLQSSPQLAYQPPVPHEYCSVVSGNQLAPMAGNTSHGGHIDTAVKSEMFPQQSPCFAPTGVCNSREPSGFNSSRPLEYGHNDMYLNHQASQPSQQFQPGNTPFSQRPLHPAPSPQTQPSHFSYTNPNIQQHQQHPYSHPYPLPPPPDTRRRFGADEQWRMSSSELNTDSQRGLWMSGGRTPSCSGPPFVQEGYFRPPLERPPANNMGFHSTPNALPAGAPIPVHGVSQMLPCRPDVSALNCWRPA* 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0202 1662 Gene3D - 9 116 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 188 225 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 289 431 - -
Vvi1g0202 1662 Gene3D - 909 1054 IPR008942 -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 112 147 - -
Vvi1g0202 1662 Pfam CID domain 917 1041 IPR006569 -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 1508 1628 - -
Vvi1g0202 1662 ProSiteProfiles CID domain profile. 910 1051 IPR006569 -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 1532 1553 - -
Vvi1g0202 1662 SMART PWWP_4 18 75 IPR000313 -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 585 599 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 1135 1184 - -
Vvi1g0202 1662 CDD PWWP_HULK 21 110 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 1576 1594 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 864 884 - -
Vvi1g0202 1662 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1156 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 1198 1418 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 371 397 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 600 641 - -
Vvi1g0202 1662 ProSiteProfiles PWWP domain profile. 20 77 IPR000313 -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 173 187 - -
Vvi1g0202 1662 SUPERFAMILY Tudor/PWWP/MBT 12 112 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 109 147 - -
Vvi1g0202 1662 SMART 558neu5 917 1048 IPR006569 -
Vvi1g0202 1662 FunFam Enhancer of ag-4 2 910 1053 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 1103 1435 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 572 691 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 864 908 - -
Vvi1g0202 1662 MobiDBLite consensus disorder prediction 173 235 - -
Vvi1g0202 1662 Pfam PWWP domain 21 105 IPR000313 -
Vvi1g0202 1662 PRINTS Proline rich extensin signature 1203 1215 - -
Vvi1g0202 1662 PRINTS Proline rich extensin signature 1219 1235 - -
Vvi1g0202 1662 PRINTS Proline rich extensin signature 1239 1251 - -
Vvi1g0202 1662 PRINTS Proline rich extensin signature 1257 1278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0202 Vvi-Chr1 1798112 1813176 Dispersed