Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0200 ATGCGTGCCCTAACCAAACTCTGCAGTGCCGCCACCGGACGGCGGTTGTTTCCGGCGGCGACTGCAGTGTCTACCAGGTCATACGCTCTGATTCCGATGGTGATAGAACACTCCTCAAGAGGGGAGAGAGCCTACGACATCTTCTCTCGCCTTCTCAAAGAGCGAATCGTGTGTATCAACGGTCCGATCTCCGACGATACTGCCCACGTCGTGGTCGCTCAACTGCTCTTCCTTGAGTCCGAGAACCCTTCTAAACCTATCCACATGTATCTCAACTCTCCCGGCGGCGCTGTCAGCGCAGGTCTTGCTATTTATGATACAATGCAGTACATTAGGTCGCCAGTTAATACCATTTGTTTGGGTCAAGCTGCATCAATGGGTTCCCTTCTATTGGCTGCGGGTGCCAAGGGTGAGAGACGGGCACTCCCAAATGCCACAATTATGATTCACCAGCCTTCAGGTGGGTACAGTGGGCAGGCAAAGGATATGACTATTCACACAAAACAGATTATTCGGGTTTGGGATTCGCTGAATGCATTGTATGCAAAGCATACTGGACAGTCATTAGATATTATTCAAAAGAATATGGATAGGGATTATTTTATGACCCCAGAAGAGGCAAAGGAGTTTGGGATAATTGATGAGGTTATTGATCAGAGACCAATGGCTTTAGTGACTGATGCAGTTGGGAATGAAGGCAAAGATAAAGGCTCTAATAAGGATTGA 726 0.4821 MRALTKLCSAATGRRLFPAATAVSTRSYALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPMALVTDAVGNEGKDKGSNKD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0200 241 ProSitePatterns Endopeptidase Clp serine active site. 117 128 IPR018215 -
Vvi1g0200 241 SUPERFAMILY ClpP/crotonase 38 221 IPR029045 -
Vvi1g0200 241 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 30 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 Pfam Clp protease 40 219 IPR023562 -
Vvi1g0200 241 PRINTS Clp protease catalytic subunit P signature 46 61 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 PRINTS Clp protease catalytic subunit P signature 195 214 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 PRINTS Clp protease catalytic subunit P signature 86 106 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 PRINTS Clp protease catalytic subunit P signature 138 157 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 PRINTS Clp protease catalytic subunit P signature 117 134 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 21 224 IPR023562 -
Vvi1g0200 241 Gene3D - 19 225 - -
Vvi1g0200 241 CDD S14_ClpP_2 46 216 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g0200 241 ProSitePatterns Endopeptidase Clp histidine active site. 139 152 IPR033135 -
Vvi1g0200 241 FunFam ATP-dependent Clp protease proteolytic subunit 29 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0200 Vvi-Chr1 1779187 1780886 Dispersed