Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0199 ATGGTGAATGTTCCAAAGACAAAGAAGACATATTGTAAGAGCAAGGAGTGCAGGAAGCACACATTGCACAAGGTGACACAGTACAAGAAGGGTAAAGATAGCTTAGCTGCCCAAGGAAAGCGCAGGTACGACCGCAAACAATCAGGTTATGGAGGACAGACAAAACCCGTCTTCCACAAGAAGGCCAAGACAACCAAGAAGATTGTGCTGAGGCTTCAATGCCAGGGTTGCAAACATGTATCGCAACACCCAATCAAGAGGTGCAAGCATTTTGAGATTGGAGGGGATAAGAAGGGAAAGGGCACTTCTCTATTTTAG 318 0.4591 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0199 105 MobiDBLite consensus disorder prediction 28 57 - -
Vvi1g0199 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vvi1g0199 105 FunFam 60S ribosomal protein L44 1 105 - -
Vvi1g0199 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Vvi1g0199 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 1 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vvi1g0199 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vvi1g0199 105 Gene3D - 1 105 - -
Vvi1g0199 105 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0199 Vvi-Chr1 1773222 1775929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0199 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 93.333 1.76e-68 198