Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0193 ATGCTGGGTGCATTTCCGATCTTGCCCCTTCCGGCACCTCCCTCAGATGGGAATCTTGGCCCTCTTCCCCTATCTCAGCTGCAGGATCAGACAACGGATGAGAATGTGGAAACCGAGGAGAAGAACAAAGTCAACTCAGCTCCAGCATCAGTTGCAACCCACACTAGGACCATTGGAATTATACATCCACCTCCAGACATTAGAAACATTGTTGACAAGACTGCACAGTTTGTTGCAAAAAATGGTCCTGAATTTGAGAAAAGAATCATTGCAAATAATGCTGGCAATGCGAAGTTCAATTTCTTGAATGGTTCGGATCCCTACCATGCATACTACCAACACCGCTTGTCTGAATTTCGTTCTCAGAATCAATCTTCTGCACAGCAGCCTCCTTCACAACCTGCAGATTCTTCTGCTCCTGAATCTGCCCCATCTGCTCCACATGCTGACAATAGTGAGACAGTGGTGAAGCCTGATCCCTCGGCCCAGTTTAAACCAGTCCGCAAGGTTCTTGAGCCCCCGGAGACTGAGCAATACACTGTTCGTCTTCCAGAAGGGATTACAGGGGAAGAGTTGGATATTATCAAGCTCACAGCTCAATTTGTGGCTCGAAATGGGAAGTCTTTCTTGACAGGACTGACCAGCAGGGAGATAAACAACCCACAGTTCCATTTTTTGAAGCCAACCCACAGTATGTTCATGTTTTTTACTGCACTGGCAGATGCGTATTCCAAAGTCTTGATGCCTCCAAAAGGGTTGACCGAGAAGTTGAGGAAGAGTGTTACTGATATGACTACTGTGCTTGAGCGGTGCTTGCATAGGCTGGAGTGGGAACGCTCACAGGAGCAGGCAAGGCAGAAAGCTGAGGATGAGATTGAGCAAGAACGGATGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTGGTTGAGACAATAGATTTTGCAGATGATGAAGATGAGGACTTACCCCCTCCAATGACTCTAGATGAGGTTATAAGGAGGAGCAAGATATCAGCGGCAGAAGAAGAAGAATTCATTGAGCCTGGAAAGGAGGTAGAAATGGAAATGGATGAAGAAGAGGTACAGCTAGTTGAAGAAGGCATGAGGGCAGCTAGTCTTGAAGAGAATGATGATGAAAGAAAGGAGGCAAAAACAACTGAGGAACAGGAACCACCAATGAGAATTGTTAAGAATTGGAAGAGGCCAGAGGATAGGATTCCTGCAGAAAGAGACCCAACAAAGTTTGGTGTCTCACCAATCACTGGTGAGCTAATTCCAATTAATGAGATGTCAGAACACATGAGGATTTCTCTCATTGATCCCAAGTACAAGGAACAAAAAGAAAGAATGTTTGCTAAGATTCGAGAAACAACTCTTGCACAGGATGACGAGATCTCCAGAAACATAGTGGGGCTTGCTCGAACCCGTCCTGACATTTTTGGTACGACAGAGGAAGAAGTCTCCAATGCTGTAAAGGCAGAGATTGAGAAGAAGAAAGAGGATCAACCCAAGCAGGTTATATGGGATGGTCACACTGGAAGTATTGGACGCACTGCAAACCAAGCCATGACTCAGAATCTGAATGGGGAGGATCTGAATGATGCTGCTAATAATGATGCTAGGACCCTCCCTGGTCCTGCTGCTCCTCCTCCTCCCAGACCTGGTGTGCCATCAGTACGGCCTCTTCCTCCGCCACCAGGCCTTGCACTGAATCTTCCTCGTGTGCCTCCAAACACGGTCCAATATTCAGCTCCAACTAATAGTGGACTACTTGCACCTCCTCCCCCCAGGCCGCCCATTGTCTCTATGATTCCATCAATCAGGCCAGCACCTCCTCCAATGTCATTAACTTCAGGACAGCAACCCCTCATGTTGAATCGGCCGCCACTTCCAATGCCACCATCAATATCTGTTAATGCACCTAATATTCCTGTACCACCTCCACCTGGGTCTCAGTTCATGCCTATGCCAGTGCCCCGTTCTTTTGTACCTCTCCCTGTTCCTCCTCCTGCCATGCATATGATTCAGCCTCCGCCATTGCCTCAAGGTGTGCCTCCTCCGCCACCTCCTGAGGAAGCTCCACCACCACTGCCTGAAGAACCTGAACCAAAGAGGCAGAGGCTTGATGATTCTCTGCTTATTCCTGAAGACCAGTTTTTGGCTCAACATCCAGGACCAGTTCGGATCACTGTATCTGTTCCCAATGTTGATGAAGGGAACCTTAAAGGGCAACTTCTGGAGATTACAGTACAGTCCTTATCTGAAACTGTCGGTAGCTTGAAGGAGAAAATTGCAGGAGAAGTTCAACTGCCAGCAAACAAACAGAAATTAAGTGGAAAAGCTGGTTTTCTAAAGGACAATTTATCACTTGCTTATTACAATGTTGCAGCAGGAGAACCACTTGCTCTTTCTCTAAGAGAACGTGGTGGTAGAAAGAGATGA 2445 0.4703 MLGAFPILPLPAPPSDGNLGPLPLSQLQDQTTDENVETEEKNKVNSAPASVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIANNAGNAKFNFLNGSDPYHAYYQHRLSEFRSQNQSSAQQPPSQPADSSAPESAPSAPHADNSETVVKPDPSAQFKPVRKVLEPPETEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFMFFTALADAYSKVLMPPKGLTEKLRKSVTDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERMQMAMIDWHDFVVVETIDFADDEDEDLPPPMTLDEVIRRSKISAAEEEEFIEPGKEVEMEMDEEEVQLVEEGMRAASLEENDDERKEAKTTEEQEPPMRIVKNWKRPEDRIPAERDPTKFGVSPITGELIPINEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKEDQPKQVIWDGHTGSIGRTANQAMTQNLNGEDLNDAANNDARTLPGPAAPPPPRPGVPSVRPLPPPPGLALNLPRVPPNTVQYSAPTNSGLLAPPPPRPPIVSMIPSIRPAPPPMSLTSGQQPLMLNRPPLPMPPSISVNAPNIPVPPPPGSQFMPMPVPRSFVPLPVPPPAMHMIQPPPLPQGVPPPPPPEEAPPPLPEEPEPKRQRLDDSLLIPEDQFLAQHPGPVRITVSVPNVDEGNLKGQLLEITVQSLSETVGSLKEKIAGEVQLPANKQKLSGKAGFLKDNLSLAYYNVAAGEPLALSLRERGGRKR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0193 814 CDD Ubl_SF3a120 727 807 IPR035563 -
Vvi1g0193 814 FunFam Probable splicing factor 3A subunit 1 703 813 - -
Vvi1g0193 814 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 46 764 IPR045146 GO:0003723|GO:0045292
Vvi1g0193 814 MobiDBLite consensus disorder prediction 530 570 - -
Vvi1g0193 814 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Vvi1g0193 814 Pfam Surp module 192 243 IPR000061 GO:0003723|GO:0006396
Vvi1g0193 814 Gene3D Surp module 187 245 IPR035967 GO:0003723|GO:0006396
Vvi1g0193 814 FunFam Splicing factor 3A subunit 1 54 125 - -
Vvi1g0193 814 PRINTS Proline rich extensin signature 550 566 - -
Vvi1g0193 814 PRINTS Proline rich extensin signature 590 611 - -
Vvi1g0193 814 PRINTS Proline rich extensin signature 675 700 - -
Vvi1g0193 814 PRINTS Proline rich extensin signature 657 674 - -
Vvi1g0193 814 SMART ubq_7 735 807 IPR000626 GO:0005515
Vvi1g0193 814 Gene3D - 703 813 - -
Vvi1g0193 814 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Vvi1g0193 814 SMART surpneu2 192 245 IPR000061 GO:0003723|GO:0006396
Vvi1g0193 814 MobiDBLite consensus disorder prediction 674 697 - -
Vvi1g0193 814 FunFam Splicing factor 3a, subunit 1 187 245 - -
Vvi1g0193 814 SUPERFAMILY Surp module (SWAP domain) 170 244 IPR035967 GO:0003723|GO:0006396
Vvi1g0193 814 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Vvi1g0193 814 MobiDBLite consensus disorder prediction 120 149 - -
Vvi1g0193 814 MobiDBLite consensus disorder prediction 674 706 - -
Vvi1g0193 814 Coils Coil 278 298 - -
Vvi1g0193 814 MobiDBLite consensus disorder prediction 545 570 - -
Vvi1g0193 814 MobiDBLite consensus disorder prediction 372 391 - -
Vvi1g0193 814 Pfam Ubiquitin family 742 808 IPR000626 GO:0005515
Vvi1g0193 814 SUPERFAMILY Surp module (SWAP domain) 49 120 IPR035967 GO:0003723|GO:0006396
Vvi1g0193 814 ProSiteProfiles SURP motif repeat profile. 194 236 IPR000061 GO:0003723|GO:0006396
Vvi1g0193 814 MobiDBLite consensus disorder prediction 120 171 - -
Vvi1g0193 814 Pfam Pre-mRNA splicing factor PRP21 like protein 261 475 IPR022030 -
Vvi1g0193 814 ProSiteProfiles Ubiquitin domain profile. 755 811 IPR000626 GO:0005515
Vvi1g0193 814 MobiDBLite consensus disorder prediction 12 51 - -
Vvi1g0193 814 SUPERFAMILY Ubiquitin-like 708 812 IPR029071 -
Vvi1g0193 814 Coils Coil 357 390 - -
Vvi1g0193 814 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0193 Vvi-Chr1 1743180 1745761 Proximal