Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0192 ATGGTTTCAATGGCGTCTTCTCTCTGCAACTTGCTGATCTTCTGCCTGGTTCTACAGGCGATGGCGGCGGCGGCGGCGGCCTCGGTGGCCGGAGCGGAGGAATTACAGCAAGAGAAAGACAGAGTTAAGGATTTGCCGGGACAGCCGGCGGTGGAGTTCCGGCACTACGCAGGGTACGTGAAACTCCGGCCACAAGACGAGAAGGCACTCTTCTACTGGTTCTTTGAAGCCCAAGGCGGTGTTCTTGAAAAGCCTCTTGTGCTTTGGCTCAATGGAGGACCTGGATGCTCATCCATAGCTTATGGAGCTGCACAAGAACTCGGTCCGTTTCTTGTTAGGAGCAATGGAACTCAGCTTATTCTTAATGATTTTTCCTGGAACAAAGTTGCAAACATTCTGTTCCTGGAGGCACCTGTGGGAGTAGGGTTTTCATATACGAACAAATCGACGGATTTGCTTAAGCTTGGTGATCGAATCACAGCTGAGGATTCTCATGCATTCTTAGTCCAATGGTTCAAGAGGTTCCCTAGCTTCAAATCCCATGATTTCTACATCACTGGAGAGAGCTATGCTGGCCACTATGTTCCTCAGCTTGCTGAGCTCATTTATGAAAGGAACAGAAAAAGCACCAAAGACTCTTACATTAATCTCAAGGGTTTCATGATTGGGAATGCAGTAATCAATGATGAAACAGACGATATGGGCCTCATTGAGTTCGCATGGAGTCATGCAATCATATCAGACCAACTCTACCATGGCATAATCAAGGAATGCGACTTCATAAGGGACAACCCTACAAACCTCTGCAGTAACCATATCAAGGGCCTCTTAGAGGCTTATTCCGATATCGACATGTATAGCATTTACACACCTGTATGCCTCAGTTCTTCCAAAGAAACCTACCGAAAATTTGTCACTGCACCAAGACTCTTCACACAACATGACCTCTGGCATCAGCTACCATCGGGATACGATCCATGTACAGAAGATTATGCTGAGAAATATTTCAACAGGGAGGATGTTCAGAAGGCCCTTCATGCCAATGTCACCAAACTCCCCTATCCATACACCCCATGCAGTAATGTTATTAGGAAGTGGAATGATTCGGCAGAGACCATGCTGCCCACAATTCAGAAGCTCTTAAAGGCTGGTCTGCGCATTTGGGTCTACTGTGGGGACACAGATGGGAGGGTGCCAGTGACATCAACAAGGTACAGCATAAACAAGATGGGGTTAAGGATTCAGAAAGGGTGGAGGGCATGGTTCCACAGGAAACAAGTGGCCGGTTGGGTGGTGACTTATGAGGGTGGCCTTACACTAGCAACCGTAAGAGGTGCAGGTCACCAGGTCCCCATCCTTGCACCTGCTCAGTCCCTTGCTCTCTTCTCTCATTTCCTCTCGGCTGCCAACTTGCCGTCTTCCAGAGCCTAG 1431 0.4843 MVSMASSLCNLLIFCLVLQAMAAAAAASVAGAEELQQEKDRVKDLPGQPAVEFRHYAGYVKLRPQDEKALFYWFFEAQGGVLEKPLVLWLNGGPGCSSIAYGAAQELGPFLVRSNGTQLILNDFSWNKVANILFLEAPVGVGFSYTNKSTDLLKLGDRITAEDSHAFLVQWFKRFPSFKSHDFYITGESYAGHYVPQLAELIYERNRKSTKDSYINLKGFMIGNAVINDETDDMGLIEFAWSHAIISDQLYHGIIKECDFIRDNPTNLCSNHIKGLLEAYSDIDMYSIYTPVCLSSSKETYRKFVTAPRLFTQHDLWHQLPSGYDPCTEDYAEKYFNREDVQKALHANVTKLPYPYTPCSNVIRKWNDSAETMLPTIQKLLKAGLRIWVYCGDTDGRVPVTSTRYSINKMGLRIQKGWRAWFHRKQVAGWVVTYEGGLTLATVRGAGHQVPILAPAQSLALFSHFLSAANLPSSRA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0192 476 Gene3D - 373 467 - -
Vvi1g0192 476 FunFam Carboxypeptidase 373 468 - -
Vvi1g0192 476 FunFam Carboxypeptidase 323 471 - -
Vvi1g0192 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Vvi1g0192 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Vvi1g0192 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Vvi1g0192 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
Vvi1g0192 476 FunFam Carboxypeptidase 36 295 - -
Vvi1g0192 476 Pfam Serine carboxypeptidase 47 467 IPR001563 GO:0004185|GO:0006508
Vvi1g0192 476 Gene3D - 327 364 - -
Vvi1g0192 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 438 455 IPR033124 GO:0004185
Vvi1g0192 476 Gene3D alpha/beta hydrolase 36 295 IPR029058 -
Vvi1g0192 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 452 IPR001563 GO:0004185|GO:0006508
Vvi1g0192 476 SUPERFAMILY alpha/beta-Hydrolases 37 472 IPR029058 -
Vvi1g0192 476 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0192 Vvi-Chr1 1727470 1732839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0192 332 471 Calmodulin-binding Proteins AT2G22960 29.286 1.96e-12 63.9