Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0188 ATGGCTTCAAGGTTGTGGGCTTCGAGGGCTGCTTCATACCTCAGGCTCTCTGTCTTCCACAGAGGGTTCTCTTCTGTTGTGAAGGATCTGAAGTATGCTGACTCTCATGAGTGGGTGAAAATTGATGGGAATTCTGCTATTGTTGGCATAACCGACCATGCTCAAGATCATTTAGGTGATGTTGTGTATGTTGAGTTACCAGAAGCAGGGGCTGCTGTAAACCAGGGCAGCGGTTTTGGTGCAGTTGAAAGCGTGAAGGCCACAAGTGATATAAACTCTCCTGTTTCTGGAAAAGTGGTTGAAGTTAATGAAGAGCTCAACAGCTCACCCGGTTTGGTTAATGCGAGCCCATACGAAAATGGGTGGATTATAAAGGTGGAGATGAGTGACACCGGTGAATTAAATTCTTTGATGGACTCAGAACAGTACACCAAGTTTTGTGAAGAAGAAGATGCCAAGCATTGA 465 0.4538 MASRLWASRAASYLRLSVFHRGFSSVVKDLKYADSHEWVKIDGNSAIVGITDHAQDHLGDVVYVELPEAGAAVNQGSGFGAVESVKATSDINSPVSGKVVEVNEELNSSPGLVNASPYENGWIIKVEMSDTGELNSLMDSEQYTKFCEEEDAKH* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0188 154 Hamap Glycine cleavage system H protein [gcvH]. 27 148 IPR002930 GO:0005960|GO:0019464
Vvi1g0188 154 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 3 152 IPR002930 GO:0005960|GO:0019464
Vvi1g0188 154 NCBIfam glycine cleavage system protein GcvH 27 151 IPR017453 GO:0005960|GO:0019464
Vvi1g0188 154 SUPERFAMILY Single hybrid motif 26 149 IPR011053 -
Vvi1g0188 154 Gene3D - 18 150 - -
Vvi1g0188 154 Pfam Glycine cleavage H-protein 30 149 IPR033753 -
Vvi1g0188 154 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 70 99 IPR003016 -
Vvi1g0188 154 CDD GCS_H 32 126 IPR033753 -
Vvi1g0188 154 FunFam Glycine cleavage system H protein 24 150 - -
Vvi1g0188 154 ProSiteProfiles Biotinyl/lipoyl domain profile. 45 127 IPR000089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0188 Vvi-Chr1 1705073 1708350 Proximal