Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0185 | ATGTATCTTTGGAATAGATTCCATTTTGAGAGGGAGAGATGCTGTCTATTCCATCTCTTCTTTGAACCTAGAAGTTGCAAGGGTGATGTCCAATGGAGAGCAGAGAATACAAACGGTGGTGTGGTTGAGAAAGGCAAACGCGACAGTTTGTTTATTGACAAGCGTGGCAAATTTAGAAGCTTTAATTTCAAAAAACAATCCAGGAAAAAGGGTGGTTCTTTAAGGGGCCGAGGATGGAAATATGGATCTGGTTTTGTTGATGGGATTTTCCCTGTAATGAGCCCCATTGCTCAGCAGATTCTCGACTTTGTACAGAAGGAAGAGCGTTCAAATAGAATTTGGGGTTCACTTGATTCTCTCTCCCCCAATCACACCACCTGGGATGATATCATTAATGTAGCTGTCCAACTTCGTCTGAATAAACAATGGGATGCGATTGTGCTGATCTGTGGATGGATATTGTACAGGAGCTCCTTCCATCCAGATGTCATCTGTTACAATTTACTTATAGATGCTTATGGGCAGAAATCACTTTACAAGAAGGCAGAATCCACATATTTAGAACTTCTTGAAGCACGATGTGTCCCTACTGAAGATACATATGCCCTTCTTCTAAAGGCCTACTGCACATCAGGGCTGCTGGAGAAAGCTGAAGCTGTTTTTGCTGAGATGCGAAAATATGGCTTCCCCCCAAGTGCAGTTGTGTACAATGCTTACATTGATGGGCTAATGAAGGGAGGAGACACCCAAAAGGCCGTGGAGATCTTTGAGAGGATGAAGAGAGATCGCTGTCAACCATCTACTGCAACTTACACAATGTTGATCAACTTATATGGAAAGGCTAGCAAGTCCTATATGGCCTTAAAGGTGTTTCATGAAATGAGGAGTCAAAAGTGTAAGCCTAATATCTGCACATTCACTGCTCTGGTGAATGCATTTGCAAGAGAGGGGCTTTGTGAGAAAGCAGAAGAAATATTTGAGCAGCTGCAAGAAGCTGGGCTTGAACCGGATGTGTACGCTTATAATGCCCTCATGGAAGCCTACAGTCGCGCAGGTTTTCCCTATGGGGCTGCAGAGATATTTTCCCTCATGCAGCACATGGGGTGTGAACCAGATCGAGCTTCATACAATATCATGGTGGATGCATATGGAAGGGCTGGTCTTCATGAGGATGCACAAGCCGTGTTTGAGGTGATGAAGCGATTGGGGATAACTCCCACTATGAAATCCCACATGCTGCTTCTATCTGCCTACTCCCGAGCCGGCAAAGTGGCAAAATGCGAAGAGATCGTGAACCAGATGCACAAATCAGGGATCAAACCTGATACATTCGTCCTCAACAGTATGCTCAACCTGTATGGCCGGCTAGGCCAGTTTGAGAAAATGGAAGAAGTCTTGACTGCAATGGAGAAAGGACCATATCCAGCTGATATCAGCACATACAACATCCTGATCAACATATACGGCAGGGCGGGATTCTTCGCCAGAATGGAAGAACTTTTCAGATCACTTCCTGCTAGAAACTTGATACCGGACGTTGTCACATGGACTTCACGAATTGGAGCCTACTCAAGAAGGAAACAGTACAATCGATGCCTGGAAGTGTTTGAAGAAATGATCGATGCCGGGTGTTACCCAGATGGAGGAACTGCCAAGGTACTTCTCTCGGCTTGTTCAAATGGAGATCAAATCCAAGAGGTTACTACTGTAATTAGAACAATGCATAAAGACATGAGAACTTCATTATAA | 1749 | 0.4437 | MYLWNRFHFERERCCLFHLFFEPRSCKGDVQWRAENTNGGVVEKGKRDSLFIDKRGKFRSFNFKKQSRKKGGSLRGRGWKYGSGFVDGIFPVMSPIAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHKDMRTSL* | 583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0185 | 582 | Gene3D | Tetratricopeptide repeat domain | 248 | 354 | IPR011990 | GO:0005515 | |
| Vvi1g0185 | 582 | Pfam | Pentatricopeptide repeat domain | 395 | 454 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 512 | 546 | IPR002885 | - | |
| Vvi1g0185 | 582 | SUPERFAMILY | TPR-like | 173 | 332 | IPR011990 | GO:0005515 | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 372 | 406 | IPR002885 | - | |
| Vvi1g0185 | 582 | Gene3D | Tetratricopeptide repeat domain | 471 | 581 | IPR011990 | GO:0005515 | |
| Vvi1g0185 | 582 | Gene3D | Tetratricopeptide repeat domain | 355 | 470 | IPR011990 | GO:0005515 | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | IPR002885 | - | |
| Vvi1g0185 | 582 | Pfam | PPR repeat | 479 | 506 | IPR002885 | - | |
| Vvi1g0185 | 582 | Pfam | PPR repeat family | 161 | 210 | IPR002885 | - | |
| Vvi1g0185 | 582 | Pfam | PPR repeat family | 511 | 559 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 477 | 511 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 302 | 336 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 371 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Vvi1g0185 | 582 | PANTHER | OS03G0856100 PROTEIN | 287 | 576 | - | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 270 | 303 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 445 | 471 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 339 | 372 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 200 | 232 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 164 | 198 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 480 | 513 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 413 | 443 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 304 | 338 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 375 | 407 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 514 | 547 | IPR002885 | - | |
| Vvi1g0185 | 582 | NCBIfam | pentatricopeptide repeat | 234 | 267 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | IPR002885 | - | |
| Vvi1g0185 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | IPR002885 | - | |
| Vvi1g0185 | 582 | Pfam | Pentacotripeptide-repeat region of PRORP | 240 | 387 | IPR033443 | - | |
| Vvi1g0185 | 582 | Gene3D | Tetratricopeptide repeat domain | 98 | 247 | IPR011990 | GO:0005515 |