Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0184 | ATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAGCTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAGCGGCATGGGTCCTGATTCTCGAGTTTTGGTTCGAAAGAGTAGGAAGCAGGCAGAGCAGTATCACAGGCTATATAAGGAATCAATCCCTGTCACGCAACTTGTGAGGGAGACTGCAGCTGTTATGCAGGAGTTCACTCAATCTGGATCTGGGAGACCTATGTTAGGCTGGCTTCAGACTATTTTGGACTTTAATGGAAACTGTGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTTTTGATGACAATGGTCCACAATTGTACCAGGTGGATCCATCAGGTTCATATTTCTCATGGAAAGCCTCCGCAATGGGGAAGAATGTCTCAAATGCAAAGACATTTCTTGAGAAGAGGTACACTGATGATATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGATTTGAAGGGCAAATCTCTAGCAAAAACATTGAGATTGGTATTATAGGCACTGACAGAAAATTCAGGGTCTTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTGGAGTAG | 765 | 0.4484 | MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEASVQKIQVLTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKESIPVTQLVRETAAVMQEFTQSGSGRPMLGWLQTILDFNGNCGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISSKNIEIGIIGTDRKFRVLTPAEIDDYLAEVE* | 255 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0184 | 254 | PANTHER | PROTEASOME SUBUNIT ALPHA/BETA | 10 | 252 | - | - | |
| Vvi1g0184 | 254 | Pfam | Proteasome subunit | 31 | 130 | IPR001353 | GO:0005839|GO:0051603 | |
| Vvi1g0184 | 254 | Pfam | Proteasome subunit | 145 | 232 | IPR001353 | GO:0005839|GO:0051603 | |
| Vvi1g0184 | 254 | Pfam | Proteasome subunit A N-terminal signature | 6 | 28 | IPR000426 | GO:0006511|GO:0019773 | |
| Vvi1g0184 | 254 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 1 | 254 | IPR029055 | - | |
| Vvi1g0184 | 254 | ProSiteProfiles | Proteasome alpha-type subunit profile. | 21 | 250 | IPR023332 | - | |
| Vvi1g0184 | 254 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 5 | 253 | IPR029055 | - | |
| Vvi1g0184 | 254 | FunFam | Proteasome subunit alpha type | 3 | 254 | - | - | |
| Vvi1g0184 | 254 | ProSitePatterns | Proteasome alpha-type subunits signature. | 6 | 28 | IPR000426 | GO:0006511|GO:0019773 | |
| Vvi1g0184 | 254 | SMART | Proteasome_A_N_2 | 6 | 28 | IPR000426 | GO:0006511|GO:0019773 | |
| Vvi1g0184 | 254 | CDD | proteasome_alpha_type_2 | 6 | 251 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0184 | Vvi-Chr1 | 1683662 | 1690883 | Dispersed/Transposed |